G1270180


Basic Information

Item Value
gene id G1270180
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22583564 ~ 22583772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1451093
ttctcattttgtctgtcatagttgaagtgtacctatgatgaaaatacaggcctcatctttttaagtgggagaacttgcacaatcggtggctgactaaatactttttttgccacaCTGTACAAGCTTTTCTCCCTCACATTTGATGTTCATTAGATACAAAGAGGGAAGTACATTCTTCAGGCTAAGGCTGCCAAGTTATTCTCCCAAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1451093 True 209 lncRNA 0.40 1 22583564 22583772

Neighbor

gene id symbol gene type direction distance location
lancl2 lancl2 coding upstream 368114 22152830 ~ 22215450 (+)
tgfbr1b LOC106590284 coding upstream 458194 22061784 ~ 22125370 (+)
LOC110489805 LOC106590283 coding upstream 529504 21996818 ~ 22054060 (+)
LOC110489791 LOC106590282 coding upstream 591574 21909632 ~ 21991990 (+)
si:ch211-276f18.2 gfod1 coding upstream 739495 21804152 ~ 21844069 (+)
LOC110489808 LOC106590291 coding downstream 379040 22962812 ~ 23028566 (+)
LOC100136251 LOC100136251 coding downstream 445171 23028943 ~ 23036510 (+)
pigm pigm coding downstream 454408 23038180 ~ 23044436 (+)
LOC110489812 rdh12 coding downstream 549056 23132828 ~ 23146739 (+)
LOC110489816 LOC106590246 coding downstream 574185 23157957 ~ 23162305 (+)
G1269737 NA non-coding upstream 233050 22316347 ~ 22350514 (+)
G1269513 NA non-coding upstream 453512 22126568 ~ 22130052 (+)
G1269351 NA non-coding upstream 659057 21923345 ~ 21924507 (+)
G1269340 NA non-coding upstream 677018 21905960 ~ 21906546 (+)
G1270359 NA non-coding downstream 238889 22822661 ~ 22823010 (+)
G1270385 NA non-coding downstream 270995 22854767 ~ 22854996 (+)
G1270386 NA non-coding downstream 273463 22857235 ~ 22857716 (+)
G1270389 NA non-coding downstream 277175 22860947 ~ 22861271 (+)
G1270390 NA non-coding downstream 277815 22861587 ~ 22861852 (+)
slc12a7b LOC106590280 other upstream 789311 21729755 ~ 21794253 (+)
G1267949 pck2 other upstream 1742166 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 2903459 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 3721053 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 6689400 15885437 ~ 15895996 (+)
G1270643 NA other downstream 793536 23377308 ~ 23377560 (+)
G1270652 NA other downstream 822888 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 862066 23445838 ~ 23451494 (+)
LOC110489839 LOC106590236 other downstream 1082699 23666471 ~ 23836438 (+)

Expression


Co-expression Network