G1270386


Basic Information

Item Value
gene id G1270386
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22857235 ~ 22857716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1451314
aatccacccagtttccctccatcaaatgCATAAAagatgaatcccaaacgttactaataaactttccaaacaagtcaaacaacatttataatcaaaccttaggtaccctaatacgtaaataatcgatcaaatttaagacagagaatcgttattgtctttaccggaggaaaataccaaagaacgcacTCTCATTcacacgcttggaaacactacagccaaaatgggagactacaatttctggctcatttttccaaaaaccagcctgaaactctttctaaagactgttgacatctagtggaagccctaggaactgcaatctgggaggacttcgccttataataaaagtgacagccattgaaaatagtggtaggctgaatttttggggggggatggtttgtcctcagggttttgcctgccatatcagttctgttatactcacagacattattttaacagttttagaaactttagagtgtttagAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1451314 True 482 lncRNA 0.38 1 22857235 22857716

Neighbor

gene id symbol gene type direction distance location
lancl2 lancl2 coding upstream 641785 22152830 ~ 22215450 (+)
tgfbr1b LOC106590284 coding upstream 731865 22061784 ~ 22125370 (+)
LOC110489805 LOC106590283 coding upstream 803175 21996818 ~ 22054060 (+)
LOC110489791 LOC106590282 coding upstream 865245 21909632 ~ 21991990 (+)
si:ch211-276f18.2 gfod1 coding upstream 1013166 21804152 ~ 21844069 (+)
LOC110489808 LOC106590291 coding downstream 105096 22962812 ~ 23028566 (+)
LOC100136251 LOC100136251 coding downstream 171227 23028943 ~ 23036510 (+)
pigm pigm coding downstream 180464 23038180 ~ 23044436 (+)
LOC110489812 rdh12 coding downstream 275112 23132828 ~ 23146739 (+)
LOC110489816 LOC106590246 coding downstream 300241 23157957 ~ 23162305 (+)
G1270385 NA non-coding upstream 2239 22854767 ~ 22854996 (+)
G1270359 NA non-coding upstream 34225 22822661 ~ 22823010 (+)
G1270180 NA non-coding upstream 273463 22583564 ~ 22583772 (+)
G1269737 NA non-coding upstream 506721 22316347 ~ 22350514 (+)
G1270389 NA non-coding downstream 3231 22860947 ~ 22861271 (+)
G1270390 NA non-coding downstream 3871 22861587 ~ 22861852 (+)
G1270414 NA non-coding downstream 42789 22900505 ~ 22900886 (+)
G1270416 NA non-coding downstream 45566 22903282 ~ 22903570 (+)
slc12a7b LOC106590280 other upstream 1062982 21729755 ~ 21794253 (+)
G1267949 pck2 other upstream 2015837 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 3177130 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 3994724 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 6963071 15885437 ~ 15895996 (+)
G1270643 NA other downstream 519592 23377308 ~ 23377560 (+)
G1270652 NA other downstream 548944 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 588122 23445838 ~ 23451494 (+)
LOC110489839 LOC106590236 other downstream 808755 23666471 ~ 23836438 (+)

Expression


Co-expression Network