G1270414


Basic Information

Item Value
gene id G1270414
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22900505 ~ 22900886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1451344
tgCTAGAGTGAAATCTAGGAGCTAAAAAAGAACacaaaatacactacatggacaccccttaaaattatTGGATtctgacgggtgtataaaattgagcgcacagccatgcaaagtccgtagacaaacattggttGTAGAgcggctttactgaagagctcagtgactttcaacgtggcaccgtcataggatgccacctttccaacaagttagttcatcaactttctgccctgctagagctgccccggtcaactgtaagtgctgttattgtgaagtgaaaacgtctaggagcaacaacagctcagccgcaaagtggtaggcaacacaagctcaagaacgggaccaccgagtgctgaagcgcctaGTGTTGCAATACTGACTACCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1451344 True 382 lncRNA 0.47 1 22900505 22900886

Neighbor

gene id symbol gene type direction distance location
lancl2 lancl2 coding upstream 685055 22152830 ~ 22215450 (+)
tgfbr1b LOC106590284 coding upstream 775135 22061784 ~ 22125370 (+)
LOC110489805 LOC106590283 coding upstream 846445 21996818 ~ 22054060 (+)
LOC110489791 LOC106590282 coding upstream 908515 21909632 ~ 21991990 (+)
si:ch211-276f18.2 gfod1 coding upstream 1056436 21804152 ~ 21844069 (+)
LOC110489808 LOC106590291 coding downstream 61926 22962812 ~ 23028566 (+)
LOC100136251 LOC100136251 coding downstream 128057 23028943 ~ 23036510 (+)
pigm pigm coding downstream 137294 23038180 ~ 23044436 (+)
LOC110489812 rdh12 coding downstream 231942 23132828 ~ 23146739 (+)
LOC110489816 LOC106590246 coding downstream 257071 23157957 ~ 23162305 (+)
G1270390 NA non-coding upstream 38653 22861587 ~ 22861852 (+)
G1270389 NA non-coding upstream 39234 22860947 ~ 22861271 (+)
G1270386 NA non-coding upstream 42789 22857235 ~ 22857716 (+)
G1270385 NA non-coding upstream 45509 22854767 ~ 22854996 (+)
G1270359 NA non-coding upstream 77495 22822661 ~ 22823010 (+)
G1270416 NA non-coding downstream 2396 22903282 ~ 22903570 (+)
G1270489 NA non-coding downstream 148878 23049764 ~ 23049975 (+)
G1270541 NA non-coding downstream 222068 23122954 ~ 23127564 (+)
G1270595 NA non-coding downstream 286817 23187703 ~ 23187954 (+)
slc12a7b LOC106590280 other upstream 1106252 21729755 ~ 21794253 (+)
G1267949 pck2 other upstream 2059107 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 3220400 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 4037994 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 7006341 15885437 ~ 15895996 (+)
G1270643 NA other downstream 476422 23377308 ~ 23377560 (+)
G1270652 NA other downstream 505774 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 544952 23445838 ~ 23451494 (+)
LOC110489839 LOC106590236 other downstream 765585 23666471 ~ 23836438 (+)

Expression


Co-expression Network