XLOC_031833 (si:ch211-207j7.2)


Basic Information

Item Value
gene id XLOC_031833
gene name si:ch211-207j7.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8079974 ~ 8093993 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062353
AGAGAGACACAATTCACAAAGCTTCTTGGTGTAACAGATCTAGTGCAACATGGAAACAGACTCTGTGACCTGTACTCAGAATTCTGAATCCCAAGGTGAACGCAGTAGTGCAGCAGGAAAGCTCTGCTTTACTGAAGATACAGAAACTACAATAACAGAAGATCACACAGATGAAAAGAAAGAACCCCAGGACAAGAATAAGGAGGAGGACACAGAAGTTATTAGTGGGTTAGAAAAAACAGAAACACCGGAAAACCAATTCACCCTTGAACCACATGATCATGCCACCTCCTTACCAGAAGGTGGAGCCACTGAACCAACAATGGAAACTGTGAGCACAAATGATGACCAGGCTCAAGAGTGGCCACCAGTGCCAGGACTGGAAGAAGATATTCAAGCAGAAGAGAATGAGTGCCAGGCCACTGAGATTCAGGATGATGTGAAGAAAAACTCTGAAGCTAGTGAAGCTGTTAAAACAGCCATGAAAGACATTCAGGGTGGAGAACCTGTTATGACGACACAGGTAGACAAAAGCACTGACTCACCAAAAATCCCAAAGGTGACCAGTGAAGAAGAGAGACAAGAGCTTGAGTCACATGGTGACTCTGACTCAATTGTGTTCCTATCAGAAAACAGTGAGGAGCTGAATATAGACTGCAAGTCTGTGGACTTTGCCACCACCAGAGAGCAGTGGGTGAGGCGGGACAGTCGTGATGAGGTACAAAATGTGCCGTATTCCAAGAGCTCTTCAATCACTGAGACAGAATCTTCCTCAAGAGCCCAAAGTGAATCCAAAACTGAATCTGGGGTTACTGCTGAAAATGTCCAGCAGAGGGAGCTTGAGGCAAACAACTCATATTGTTTGACTGAGAATGAGGTGATGCAACAGGTGTGTGATGAAGCTCCACCCCTAGAGACATTTCCAGACCGGCCAACCAATCGAGAGCAAGAGAACTCAGGCTGTGTCTCCATGGAAGTAAAAGAGCCATTGATAATCCCAGAGAGGAGGAGGGACAGTGAAAGTCAAGAGAGAGAGGCGAGTGAAACAGGTGAAGAGCGAAAGCAAACACAGACAGGTGGAACCGGAGGAAAGCAGCTGCTGGAGGTTAAGGATCAAAGGCAGGAACGGGAAAACAAAGGACAGAGTGCGGAGAGCCAGTCAAACACAAAGCCTCATCAGGGAGAAGGGAAAGCCAAGAGAATGCAGGTGGACCATTTTGATGACAGCCAAAGCGATAGCGGCGTATCAGCAGATTTCTCCCCGAACAGCACAACAGATGAAGCTCCTCAGCCCTCCGAATCTCCTCCTTATGAAACTCCCATTGACAGGGAGATCCGTTTAGCGTTGAAGAGAGAGCAGAGTCTTCGACGATCCAGAGGACTGTGCGATACAACTGACATGACCAATGAGTTTGTGGAAATTCCTTTGAGGAAACCTATTCTATCCCAGGACCTCCAGATAAGACCCAGCCAAACTCTCGACAAGGACCGGCAGTTTGCAGGAAAGAAGATGCAGAAGGAAATCAGTGCCGAGACAGAGAGGGAGAAGGTTCTGGTTGAACTGGGCCGACTACCAGGTTTCTACGACAAGGGAAAGGAGGTACAGCTTCAAGAAAAAAAGCTGCTCTTTGAATCTTTCCAAGAGCAAAAGGAATCAATGGCAGCATTGAGAAGAGGATCTGCCTCTAGCTATGTAGAATCTGCAGCTGGAATCCTGGAGGTTGATTCTGCGGTCAATGTTAGACAACGCCTAATGCAGTTCTCTCAAAATCCTCCTACAATACCAGTATCCCAGTATGAAGGCTCCAACGGCAACTCACTTGCTGCTAGAGGACCTGGTCTGACCGAGGGAATCAAGGGACAGATAATCATCATAGAGGCCAGCTCTTTCCCCACAACCGCGGGAGAACCAACTGGTTATAATTCTGCATCATGGACAGATGGCAGATCTGTGAAAGTGATGAATTCAGCAGGAGTGAGGGCTTCGTCTGCAGAGCCTGTTAGTGCAAGACAAAGCACAAATACACAAGTGACTGAAGGCGAAGGCATAGCGACAGAGAACCCATTCTTCAAACTCCGCACTTCTGTAAATCTGCATTCTCAGGTAGAGCTAGATATTAAAGAGGCcaaggagagagaaagagaactaCAGAAACAAAGAAGCAGTCTTTATGGGGGAGCAACCGAGGATCCAGAGGAAGCCAGGAGAACGCGAATGGATTCAAAGACtgaaagtagagtaaaagtgGAAACAGGATCCTCTAGCAAAGCGACTCTtagtcctcctcctcctccacagtCAAAATTGACTCCCTCAGGCCACCAAATGGATGTGTCAGTTCGGAATCAATCCACAGGAAAACTGGATCTAACATGGCCACCAACCCATGCTGATGAACAACCAGGACAAACCTCAGAGAAAACCCTAAAGATTTCAAGGCAGCGAAATCCATTACTTGAGCGCTGGGAGTCTGGGATGGTGAACGGCCATGTTGAAGACTGAAACACAAATCCCAAACAAGACAGTAAAACACAGCAGATGAACAAATGAAATCTCTCCGACCTTTAAGAAGAACCCACCATGTGCCATTATTGGTGGATAAAGAGCATCAGTTGCCTCACAAAGACACTGCAATAGTGAGAAGTCCAGCACACTAGAAACACTGGTATAATAATACTCAATGAGCCAGGTTGTTGTTATTGGAAGTAGGTAGGTATGACTGTTGGGCAGTGTTGAATGTGTTAAATGATTTCAGTGTCATATTGAATGTATTTATAATCAAAAAAACATAGCTGCTCATTTCGTAGTAACAAAACAgtcaataataatgtaaaattagaTAAGGATTgtatttaaatgaacatttaagaTTTAGTTACTGATTAGACAAGCTAAATCAAACAGCCAGGAAGCGGAATTATGCATAATATAAAAATggcataattaataaaaatgttttatcagTTTGTTTTGGCGGGATTTTCCAATTGTTGAATGTTACTTAATGTCTATCCTAGCTGGTGTATATGCACTATTCTATTACATTTTGGAGCACATTACATTTTTAGGGTCGGGAATCACCAGAGTCCCCAAACTGTAtaacagtattcattcattcattcattcattcattcattttcttttctgctaagtcccttt
>TCONS_00062354
ATCCGTCTTCATATCTCCACGCGCGACGTCAGAAAACCCTAAAGATTTCAAGGCAGCGAAATCCATTACTTGAGCGCTGGGAGTCTGGGATGGTGAACGGCCATGTTGAAGACTGAAACACAAATCCCAAACAAGACAGTAAAACACAGCAGATGAACAAATGAAATCTCTCCGACCTTTAAGAAGAACCCACCATGTGCCATTATTGGTGGATAAAGAGCATCAGTTGCCTCACAAAGACACTGCAATAGTGAGAAGTCCAGCACACTAGAAACACTGGTATAATAATACTCAATGAGCCAGGTTGTTGTTATTGGAAGTAGGTAGGTATGACTGTTGGGCAGTGTTGAATGTGTTAAATGATTTCAGTGTCATATTGAATGTATTTATAATCAAAAAAACATAGCTGCTCATTTCGTAGTAACAAAACAgtcaataataatgtaaaattagaTAAGGATTgtatttaaatgaacatttaagaTTTAGTTACTGATTAGACAAGCTAAATCAAACAGCCAGGAAGCGGAATTATGCATAATATAAAAATggcataattaataaaaatgttttatcagT
>TCONS_00062355
aatcGGCTACTTTTACTACACAGCAATGCTAAAATGCGGaacaagtcaaataaaaaaaaattaaaaaaacgttAATTGAACGTCTATGCTGTATCCAAAAATCGCCCCTAATATAGAGTATTTTTTAGTGTAATGTTGGGACAGATTGTTGCCTCGCTGAACCGGAAACAGTAGAAAACCCTAAAGATTTCAAGGCAGCGAAATCCATTACTTGAGCGCTGGGAGTCTGGGATGGTGAACGGCCATGTTGAAGACTGAAACACAAATCCCAAACAAGACAGTAAAACACAGCAGATGAACAAATGAAATCTCTCCGACCTTTAAGAAGAACCCACCATGTGCCATTATTGGTGGATAAAGAGCATCAGTTGCCTCACAAAGACACTGCAATAGTGAGAAGTCCAGCACACTAGAAACACTGGTATAATAATACTCAATGAGCCAGGTTGTTGTTATTGGAAGTAGGTAGGTATGACTGTTGGGCAGTGTTGAATGTGTTAAATGATTTCAGTGTCATATTGAATGTATTTATAATCAAAAAAACATAGCTGCTCATTTCGTAGTAACAAAACAgtcaataataatgtaaaattagaTAAGGATTgtatttaaatgaacatttaagaTTTAGTTACTGATTAGACAAGCTAAATCAAACAGCCAGGAAGCGGAATTATGCATAATATAAAAATggcataattaataaaaatgttttatcagT

Function

symbol description
si:ch211-207j7.2 Orthologous to human MISP3 (MISP family member 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-232 Orthologous to human MISP3 (MISP family member 3).

Ensembl:

ensembl_id ENSDARG00000090793

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062353 False 3160 mRNA 0.44 4 8079974 8093993
TCONS_00062354 False 579 lncRNA 0.36 2 8090423 8093799
TCONS_00062355 True 721 processed_transcript 0.35 2 8090577 8093799

Neighbor

gene id symbol gene type direction distance location
XLOC_031832 palm3 coding upstream 5125 7977611 ~ 8074849 (+)
XLOC_031831 myh10 coding upstream 421689 7553085 ~ 7658285 (+)
XLOC_031830 pa2g4a coding upstream 528834 7533601 ~ 7551140 (+)
XLOC_031829 erbb3a coding upstream 548547 7466223 ~ 7531427 (+)
XLOC_031828 AL953886.1 coding upstream 626143 7453355 ~ 7453831 (+)
XLOC_031834 klf1 coding downstream 35550 8129543 ~ 8140958 (+)
XLOC_031835 nfil3-3 coding downstream 59820 8153813 ~ 8154866 (+)
XLOC_031836 nfil3-5 coding downstream 78234 8172227 ~ 8180042 (+)
XLOC_031837 NA coding downstream 170771 8264764 ~ 8271403 (+)
XLOC_031838 gcdha coding downstream 220458 8314451 ~ 8330577 (+)
XLOC_031826 AL953886.2 non-coding upstream 644274 7429311 ~ 7435700 (+)
XLOC_031820 NA non-coding upstream 871345 7207593 ~ 7208629 (+)
XLOC_031817 AL929341.1 non-coding upstream 1199925 6879927 ~ 6880049 (+)
XLOC_031811 NA non-coding upstream 1338566 6718916 ~ 6741408 (+)
XLOC_031839 NA non-coding downstream 245278 8339271 ~ 8346941 (+)
XLOC_031840 NA non-coding downstream 356318 8450311 ~ 8453642 (+)
XLOC_031844 CU571254.1 non-coding downstream 597415 8691408 ~ 8691993 (+)
XLOC_031845 CR954285.2 non-coding downstream 611156 8705149 ~ 8997996 (+)

Expression


Co-expression Network