G1271297 (LOC106590247)


Basic Information

Item Value
gene id G1271297
gene name LOC106590247
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23196452 ~ 23203364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1452316
CTGGTTCATtggaaatacaattttatttgacattttacAATAATACAATGAAATACAGTACACATTAGCACATTTGTTTAAGATTAATATAAGAATACAACAAGATCCAAACttataaatgtaaaaaaacacattctaaaattgaaagaaaaatatattttgtaataCTAGCAAAACATTGCATAACATCTTCCACAAATATTATTCAATTTAGTGATAATTAACAACATATTTACCTTTGTTACAATGTTATGTGAGGACCAGGTCATGCCAAAGGTAATTGCAGTCTTGTGCTAGTATTGTTTTCATGATATGTGTAATGTTTCTAAATGTTATCTGATCAAACATGCAAATATAATGGGAAAATCTGATATCTACATCTTTATTTTCAATATTCAGCTTTTGAAATCTCTATAGTCTTGTGAACATGTCATCTATCATGCCCTCTTTCTGGTCATCATTCTGCGATTCACCCTCAGTGCCTTCCATCAGGTTTGAAATCAATGTCGACAGTGTGCTGTTTGGGTCCAGCAATTGAACCAGTGGCACGTTCACACCCCTCTCCTGAAAGATGAGGTTCTGCAAAGTCATGGCTAACATTGAGTCAATGCctaaggcagagagaggagaatcgTCATTCAACTCATTCTTGTCAACACCGATTGTTTCACTGAGTACAGATCTGATATAACCACTTGGGGAGGAGGAAGCAGCATTATGTCCAGACCGGGACTCTTTCAATTTGTCTTTTTGCATTGCCTCTTCCACTAATGCAGTCATACGCATGGTCAATGAGGCATTTTGAGACATGACATTGTACTTCATGTTTTTGAAGTTGAACTTGCATATAGCCTGTTGAGGTTTGTTTAGCTGGAGGCATTGTTCCAGACTTTCGCGAATCTCTGTAACATCCATCACCATCAATCCCTTTGCCTCAAGAAATCTTTGGAAATGATCCTTGTTCAACAAGAGACCAAGGTTCAAAGGCCCCCAGTTGATGGATTGCCCAGCTAGTCCAATATTCCGTCTATAATGACAGAATATGTCCAGAAATGAATTGGCTGCTGCATAGTTTGTTTGTGAGACATTGCCAATGAACGCTGCAACAGAGGAGTAGCACACAAAGTAATCCAATTTGCAGTGTTTCGTGGCATGGTGTAGATTCAAAGCCCCATTCACTTTGGGCTTCAGGACTTTCTCATACAGAGACTTGTCAAGGGATTCAATCAGGCCATCGTGCAGGACAACTGCACTGTGGAACACTCCTCTGATTGGACAAGAGGGAAACTTCTTGCCAATGAGACCAATCGCTCTGAGCACATGCTCAGAGACCGAGACATCACATCCCATACATATGATATGGGCACCGTATTGCTTCTCCAGATTGCAGATCTCCTGCTGTATGTCAGGTGTGGGGCTACTTCTGGAGAGTATGACAATGTACTCTCCACCTTTCTGAGAAATGAATTTCACAGTTTCAAATCCCAGCCCAGTGAGGCCACCTGTGACAATGTACATAGAATTCTTTTGGAAAAGCTGATTTGGTTTAGGCAACAAAGGAATTTTGGACAGTGTGCCTCTGGAATCATCTTTACCTAGTGCCACAACAGGCACGGTCTTTGAGCTAAAATACGATTCAGACTCCTCAACAGGCAAGAAGTCGATGCTTCCTGATGTCAACCTTTGAAAGGTAGAGTGTTCTAGAACAAATGACTTCCTGTCCAAATGCATGGACTTGAGCCAACGATAAATGTGTGGCTTCTGGGCAATGAGTGATCCCCTTTGTATGATGCTGGACATTTGAAGAGTTTGCATTCGAACACTATCCTTCACATTTTGGAAAACACTCTGTGCCAGCAAGCATTGGGACTGGGATTCACAGACAATGAGAATGTGTCTAACACCAGGGAAATTGCCTGCTTTTGCCAACAGAGATTCGTCAAATGGCGGAAGGAGGACAAATGCATCCATTTTATCAGCATTTACAAACAGCCCATTGCACTGTGTCCCTACAATGACATTCCATCCTGATTTGTTTGCTGTTTGGGCTAAAACCTTGAGCAGACCAGAATCAGGAACAGAGGAGATGATCCCCAACCTTCTCTGTTCTTTGACTCTAGTTAACGCTTTGTACAATATTTCCCATGCCAGCACAAAGTAGGACACACAAGGAGCCTCCTTTAGAAATGGGAGCCTCTTTGTTTTGTAGCATGCTTCTTCAGGAACCATGATCGCAGAGGATGCAAGAACAGGGTAGCATGAGACAACATGGTCTCCCACTTTCAGTTTGCTCACATCTTTCCCGACAGCTGTGACAGTGCCACTGAAGTCAAGGGCCAAAAGCTGATGGTTCTGGGATGTGTGTTTGTTCCAGTAAATTGTCTTGCCAAAGTGCAGATCAGAGACACTGACAGGAAAGTAGTCTGAGGAATGAACAGATATCTTACTGAGCTGAATCTCAACTGATTTCTGCTGGATGTCCTTTTTCTTGACCTCACAGCTAATGGCAGACAAGCTAGTCATTCTGTAGGGGTCAGCCGTCTGAAAGATACATGCCTCGGACATTGAAGAAGACATACTTCCCCCAGAGCTCTCAATGCTTTCCATGGGAGTATGCACAATATCAGATTTAAAAATCAGCCCATCTTTCACAACCAACTCCTGGTATTTGCTGCAAGGGTATGACTTTAAGACCTCAGACAGAGCTCTGATGTCCTCTGTAGAGACAGAGCTGATGTCAATCAGCTGGAAGGAAAGATCTGCCATTTCTGCAGCGCATGCTCTAGTCATGCCTGAGAGGGCAAAGCCTGGGCTGATGCGGTCTACTGTGTTCTCTGCCGATCGGTAAGTAATTACTCTGATGGAGTTTGGAAAATTACTCGCCCTTAGTTCCAGGACTAGTTGACGGAAAATCTCACAGCAATTTACTATATTCTCCAGAACAGTCTCGGTTTTGACTGAAGTGAGTTCTTCCTCACCCCACATAAACAAGACCTCTTCAAAGTTTTTCTTGATATCTGAGATATTAAGGTTTGCCAGAAGTGTGGGAAATCCATGGTTTAAGAACTCCTTAGCATGTGCAAAGGGAATGTATTTAGACATTGAGCTCAAGTGTGGCTGCATGGCTTTGGAAACTCCTACCTGGTCAGAAAAGACCAAGGCCTTTCGTGCCTGAGAGGACTTGATGTCCTCAGAGACAACCCTGAAGTCATTGTGGAAGAAGTATTCCTCAACAACACGAGAATGGCTCCCAAGGTACTTGATCATCACATGCTTAAGCTCAACCAATATTCTTCCCTCTTTGTCTGTGAAGCAACCACATACTTCAAAGTGATCAACTCCAACATCAATTGCTCTCACATAAACAATCATTTCCGGTTGCAGAGGTTCAAAGACTGTCAAGCTGCCTATTTTGGCAGGAAACCCAGGCCTGGAAGAGAATCCGTGTGCTACTGTAACAGGAGCGAGTTGCATCAGGAAGTCTAGAACTACAGGGTGAATACAGTAGTCATGCAACTGAGACAGCAATTCCTCTGGAACTGTGACAACTGAAAAAGCCTCCTTAAGCTCTTCACCATAGTGTACATCACCCTTGTTCTGGAAAACAGTGCCATACTGAAACCCACCATGACCTATGTTGTAAAACTCCTCAGAGCTCACCACTGACTTGCACCTTTTGTGGATAGAGCTTAGCGAAATGTTCTGCTCTTCGACTAGTCTTTCTTGCTTGCACACTATTGTGCCTGATGCATAGGTTGAAGAGGAAGAATGTATCTTAATATGTGTCTCATCTTCTGCTGGTTCAAGTTGCACTTTCATCTCTGGTGCATTTTTGGTGAAAACAAATGGACTTTGAAAGCTGATGCTGATTTGCAGTGTGTTGAGTGGCACTTTTGGTTTGGCACTTAACATGAAAGCAGACAAACCCAACTCAGTATAGAAAGCACCAGGGACAATGGCAACACCATTGTGTTTATGCTCATGCAAGTAAGATACTGAGTCAGAAAACAAATCACAGCTAAAGCTATTGCCCTCACTTCCTGTCTGAGTTAGCACAGGATGAGTACCTGCTGTATTTATTTTTGATGCAGGAATGATAACATCTCTCTGAGTGGAATCAAACTGATACACAGGGAAATGTGTTGGTAATGCCTCACAGCCTCTGTAGAATTGATCCCAGTCGATCTGAACCCCAGACTCAAACAGTTTGGATACAGTGGTCAGCATTGTCTCATGATCTTTTTCTGGCTGCACTGAGGACATAACTATGGTGTCATTTCCCAGAGTCTCCTGGATGTTCCTTTGTAGAGCCCTTCTAGGGCCTATCTCTACAAAGACCACATTATTTTTGTCTTTGGTTGCTGATCTCACTGCCTGTTCAAATGAAACAGGCTCTCGAATGTTCCTAGCCCAGTATTTGCCTGCGCTGAAATCTGGCTGCTCTACCTCCTTCCCTGTCACTGTGGAGAACAATTCTGTCTCAACATGATTCACCTGTAAAGAACCAATACTGTCCTCTATTTGAGAGAGGATGGGATCCATCATCTGGCTGTGGTATGCAGCAGGGACATCCAGAACATGGAGGAACAGATTCTTACTCTTGACTGAACTGCTTAGCTTTTGATGGAGACTGTCTATAGCATCAGCATCACCTGCAAGGGTGCAGGACTGTGGGCTGTTGGAGGCAGCCAGGCAAACCTTATTTAAGTAGGGGGGAAGGAGGTTCAAGACCTCTGACACGGCCATGTTACTGACCACAAGCATTTTCCCTCCTGTTACCTTACTCTGCAGAGTACTGCGGAAATAGATCACCTTCACTGCATCCTCAAGGGACAACAGACCAGAGCAGTGGGCAGCAGCAACCTCTCCAACAGAGTGGCCAAGAATGGCATCTGGTTTGATGCCCCAGTGCTTGAAGAGACTGGCAATGCCAACCTGAATGGCAAAGAGGAGGGGCTGGACAACATCTGGGTTTGAAAAGTCCTTACTCTCAGACTCACTCTCAAGTCTCTCTAAGATGCTCATGTTATTGAACATTTGGAAAAGCATCTCCACCTCCCTGATCTTCTCTCTGAACACAGGCTCATGTTTCAGGAGCTCCTTGCACATACCTTGGTAGGTCACACCATTACCACAAAAGACAAATACTAACCTTGGATCTGAGTATGAGGGGTAGGGAGTTTTACTCAGGGAAGACTTGAGTTGATCTTTTAGATCAACCAGAGAGGAAGTTCTGAAAGCCTTCTTGTATTTGTGTTTTAAGTGACTTCTCCTGCAAGCAGATGTGTATGCAAGAGCTTCTAAATCAACTTTGTTGTCTTTGTCTATCTGTTTAATTGTGTCCTCCATCATCATACTGATAGACTTTTCAGAACTCGCAGAGAGGACAAAATACTTGTGTGATTTTCTACCACTCTTTCTAGAAACCTGTGACTGCTTGTGTTGCTTGACAATAACATGTGCATTTGTTCCTCCAAAACCAAAGTTATTTATCCCTGCAACCCTTTCAACAGAATCTCCCCACTTTTCTGCTTCAGTGGGAACCTTTACATTTAAGGCTTTAGCGTCTATACTGGCACTGTCCTCAGAGTAGAACAGTGAAGGGACAATGATTTCATGCTTCATCATTAGGAGTACCTTGATTAGACCTGCCACTCCAGCTGCAGATTCTGTGTGTCCAATGTTGCCTTTCACAGAGCCGATGCGGAGTGTTTCTGAACCTGGAGGTCTGGCTTTGGCAATGACTTTGGAGATGCTGCCTGCTTCTATGGGATCCCCCACTGGAGTTCCAGTCCCATGAGCCTCTATGTACTGGACAGATGACAGGTCAGACTGTGAATAGATTCTGCGGAGCAGCTCCTCTTGCTGGACCATGGATGGCTTGGTGATTGGAGTGACTGTGCGGCCATCTTGGTTTACAGCAGTTTTTCTTATGATGCCCCATACATGGTCATTTTCTTTGAGAGCCTGGGTAATTAATACATAATCAGTGTGAAATATCATGTGTAGCCTGTCAGAAACATTGACAGCGATTTTGTGACAGTTAAACATAAGATATTTACTTGTTTCAGTGGCTTCAGCAGAATAACCCCGCAACCCTCTCCTCTGCCATAGCCATCTGCTCTGCTGGAGAAAGGTTTGCTTGTGCCTTCAGGGGAAATCATCTTTGCTTTGCTGAGAGCGACAAAGACTCGTGGTTGTATGATACAGCTGACACCACCACAAAGGGCCATCTCGCAATCACCTGATAAATTAAAGCATATAAAATACCCCAGATTATATTTAAGCAACAAGGCCCAAGAGGTtatggtatatttaagcaataaggcatgaggggccgtggtatattggccatatatttaaaaaaatccaaAGTGGCTTATTGCCACTAACATAAAAAGAACAGTAAATAATTATTTTTGactcatacccgtggtatattgtctgatttacgcacggctgaaatgctgTTTCAGACAGTCAGCGCATCCAGGACCCAAACTCCCCGGTTTATAATTTGTAATGAGATACCGACCATGTTCTTTTAGTGTTGAATTATGTCAGGTATAATTTTATTGAGAAAAGGTTCCATGCACGTGCAATGTAAATATGACACTTTACCAACCTTGTCTTATGGCTTGACAAGCAAAATGAAGTGCAACAAGGGATGAAGAGCAGGCACTGTCAATTGACATTGAGGGTCCAGTGAAGTTGAAGACGTAGGAGACTCGGTTGGAAGCTAAACTCATAGCTAGTCCAGTGCCGGTGCAGTGGTTGATTATATTTGGGTTGACACTTCCGGCAGATTGTTCATAATCTCTGTTCATTAGC

Function

NR:

description
probable polyketide synthase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1452316 True 6831 lncRNA 0.43 2 23196452 23203364

Neighbor

gene id symbol gene type direction distance location
LOC110489813 LOC106590295 coding downstream 39500 23146869 ~ 23156952 (-)
LOC110489811 LOC106590294 coding downstream 73626 23060684 ~ 23122826 (-)
si:dkey-225n22.4 LOC106590290 coding downstream 240688 22907916 ~ 22955764 (-)
LOC110490829 LOC106590245 coding downstream 297211 22898112 ~ 22899241 (-)
LOC118938910 NA coding downstream 399473 22795564 ~ 22796979 (-)
pks1 LOC106590299 coding upstream 8753 23212117 ~ 23221568 (-)
LOC110489819 LOC106590300 coding upstream 18328 23221692 ~ 23242314 (-)
acbd5a acbd5 coding upstream 50522 23253886 ~ 23275145 (-)
LOC118938792 NA coding upstream 132108 23335472 ~ 23337723 (-)
LOC110489827 NA coding upstream 134518 23337882 ~ 23339790 (-)
G1271287 NA non-coding downstream 18261 23177992 ~ 23178191 (-)
G1271285 NA non-coding downstream 20353 23175870 ~ 23176099 (-)
G1271201 NA non-coding downstream 169656 23023305 ~ 23026796 (-)
G1271085 NA non-coding downstream 352623 22843598 ~ 22843829 (-)
G1271082 NA non-coding downstream 355540 22840486 ~ 22840912 (-)
G1271299 NA non-coding upstream 1223 23204587 ~ 23204788 (-)
G1271370 NA non-coding upstream 167084 23370448 ~ 23370759 (-)
G1271376 NA non-coding upstream 201523 23404887 ~ 23407463 (-)
G1271556 NA non-coding upstream 533465 23736829 ~ 23737030 (-)
G1271557 NA non-coding upstream 533996 23737360 ~ 23737699 (-)
G1269265 NA other downstream 1393100 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 2236363 20958372 ~ 20960089 (-)
G1267452 NA other downstream 2905779 20290350 ~ 20290673 (-)
G1267414 NA other downstream 2927964 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3742682 19435018 ~ 19453770 (-)
G1271421 NA other upstream 509991 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 2842884 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3308161 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3351604 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3366914 26566351 ~ 26694581 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G283790 NA non-coding CI01000072 null 209265 ~ 215233 (+)
bowfin (Amia calva) AMCG00019213 NA misc CM030124.1 CM030124.1 9251152 ~ 9434114 (-)