G1270565 (LOC106590299)


Basic Information

Item Value
gene id G1270565
gene name LOC106590299
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23212121 ~ 23218465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1451529
CTGAAAATGTGCCTTTATTCTTggtaatatagtataatatagttgACAAAACCTCAGGCTTTGATTATGTCACTGGATAATTCAATGAGCTTTTCGTATCAATGGAGTAGGGGTATTTTTGCAACTTAGACTTTAAGCCACACTCAACAAAACTCTAAACCTCCATTTCACAAAATGTTAACATGCAATGTTAACAAACAGAAATTGTTgctaatttaaaaataaaaaaaaatcggaaatatcacatttacataagtattcagaccctttactcagtactatatTGAAGCACTTTTGGTAGCTATTACAAACTTGGcacccctgtatttggggagtgaacctttgccccaatctgaggtcctgagcgctctggagcaggttttcatcaaggatctctctgtactttgctccattcatctttggcTTGAtcctgcctttccaaatcatgtccaatcaattgaatttaccacaggtggactcaatcaagttgtagaaacatctcaaggatgatcaagggaaacaggatgcacctgaactcaatttcgaatctGATAGCAAAGAGGCTGAAatcctatgtaaataaggtttaaCTGTTTTTTATATTTGTAACAAATTTGCAAAAATTGAATTTCttattatggggttttgtgtgtagatggacgaggggaaaaaacaatttaatcaattttagaataaggctgtaacgtcacaacatgtggaggaagtcaaagggtctgaatactttctgaaggcactgtagcatcCTTTAAAATAAACGGAACATTTACCAATACAAATTATATTAGACAGTGTTATAATCCAAAACCCTCAGTAAAATATTTCAATGTTGCTAGTACACATTGCTGTTTTACCCACTCTCTTTCAGAAGTGTTACCAATGTAGACAGTGTGGTGTTTGGATCCAGTAGTTTAACCAGGGGAACATTCACACCTCTCTCTTGGAAGATGTAATTCTGCAGAGTCATAGCCAACATTGAGTCAATACCCAGTGCATACAGGGCAGTGTCGTCATTTACCTCATCTATGCTAACACTGGTGATCTCACTTAGCATAGCCCTGACATTCTCATGTGCTGTGGAAAGCTGTTGGACAATGGGTTCTGTCATGTTGGTGTTCTCAAGTTCTTGCTCGACCAAAGCTGTCAGCCTGCCTCTGAGAGATGCGTTTTGGGAGAGAACGTGGTTGCTCAGATTTCTGAAGTTGAATTTGCAAATGACTTGCTGTGGATTGTTCATCAACAAACACTTTTCAAGGGCCTCATGGACTTCTGACACCTCCATTATCATCATGCCCTTTGCCTCGAGAAACCTTTGGAAATTGTCTCTGTTCAACAAGAGACCGAGGTTCAAAGGCCCCCAGTTGATGGACTGTCCAGCAAGCCCAAGGTTTCGCCGATAATGAGAGAAAGTGTCCAGGAACGAATTGGCTGCTGCATAGTTAGACTGCGAAGCATTGCCAATGAACGAAGAGATGGAAGAGTAGCACACAAAGTAATCCAATTTGTTGTGCTGTGTTGCATAGTGAAGATTCAATGCCCCATTCACTTTGGGTCGAAGAACTTCATTGAAGTGTGATCGGTCAAGGGTTTCGATCAAAGCATCATGCAACACAGCTGCACTGTGAAACACTCCTTTGATTGGACAGGAGGGAAACATTTGTACAATTGCTGTGATTGCATTCACAACCTGCCCTGACACTGACACGTCACATTGGACACTCATGATAGACACCCCACATCTCCTCTGGAGAGTGTCCATCTCCAACTGCATCTCAGCTGACATAGGACTTCTGGAGAGGGTTGCAATGCATCCACCACCCCTGTGAGCAATGAACTTCACAGTCTCGAGTCCCAAACCCGAGAGCCCTCCGGTTACAATGTACACACAACTCTTCTTAAAGAGCTGCCGTGGTCTCATTAGCAAAGGGATATCAGATAGTGTATTTTCTGAATCCGCATGACCCAAAACTACTTGAGACACAGCCTTAGCTCTGAAGTAGGACTCACAGTGCGCAGTGGGCTGAGGATCTCTTGTGTCTGTCGATTGAAAGGTAATGGTTTGCAGAGATTGCGATACACCATCCAAATGTAATGACCTCAGCCAATTGTGGATCTTTGTTTTCTGTGCCTTTATATTGGCTCTCTGGAAAACATTTGACACGTAAAGTGTTTGGATGTGTGTATGTTCACTCTCATGTGCAAAAATGTTTGCTGAGGATGACACCTGGTTGTCACAGACTACAACAATATGCTTTGCTGTGGCTCCACTGCTTATTCTTACCACTACAGATGGATCAAAGGGAGGCAATACAACAAATGTATTACACTGATCAATGTTCAGGAGTTGTCCACTAAACTGGGGCAGAACGATGGCATTCCATCCTGATTTGTTTGCCGTTTGGGTTAAGACCTTCAGCAGAACAGAGTACTGCGGAAATAGATCACCTTCACTGCATCCTCAAGGGACAACAGACCAGAGCAGTGGGCAGCAGCAACCTCTCCAACAGAGTGGCCAAGAATTGCATCTGGTTTGATGCCCCAGTGCTTGAAGAGACTGGCAATGCCAACCTGAATGGCAAAGAGGAGGGGCTGAACAACATCTGGCTTGGTATAATCATCATTGTCAAAATCGTTTGCTATCTTTTGTGAGATGCCAGTACTTTTGTAATTCTGGAAGAGATTCTCAACCTCTCTGACCTTTTCTCTGAACACTGGCTCCTCTTTCAGAAGCTGCTTACACATTCCCCTGTAGGTCACTCCATTCCCACAGAACACAAAAATCAACCTGTTATCTGACCTTGATGGCTCAAGCTTCCTGTTCATCGCACACTGCAGTTGATTCTCTAAGTCGGGGACAGAGGACGTCATAAATGCTTTCCTGTATTTGTGTCTCAAATGGCTCCTCCTACATGCTGAGGTAAACATCAAAGTGAGTATGTCAGTTTGCTTATCTCTGCTAAGTCTTTGATATGTGTCTGTGATAGACATTGCCAATGAGTTCTCAGAGGCTGCAGACAAAACAAACAACTTGGGACTGTCATAAGTAGTCAATCTGGTGTTGTTGCCTTGCACATACTCCTTCACTATCGCATGAGCATTTGTCCCTCCAAACCCAAAGCTATTAATGCCAGCTAGCCTTGCCATGGGCTCTGTTTTTTCCCACTTCTCTGCTTTGATCGGAACTCTTACATTGAGAGCTTTGGCATCGATACTGGCACTATCCTCAGAGTAGAACAGTGAAGGGACAATGGTTTCATGCTTCATCATTAGGAGTACCTTGATTAGACCTGCCACTCCAGCTGCAGATTCTGTGTGTCCAATGTTGCCTTTCACAGAGCCGATGCGGAGTGTTTCTGAACCTGGAGGTCTGGCTTTGGCAATGACTTTGGAGATGCTGCCTGCTTCTATGGGATCCCCCACTGGAGTTCCAGTCCCATGAGCCTCTATGTACTGGACAGATGACAGGTCAGACTCTGCCGAGTAGATTCTGTGTAGTAGCTCTACCTGCTGGACCATGGATGGCTTGGTGATTGGAGTGACCGTGTGACCATCTTGGTTTACTGCAGTTCTTCTTACTATGCCCCATACCTTGTCAAAGTCCC

Function

NR:

description
uncharacterized protein LOC109899028

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1451529 True 3620 lncRNA 0.43 2 23212121 23218465

Neighbor

gene id symbol gene type direction distance location
ptchd3a LOC106590298 coding upstream 224 23204933 ~ 23211897 (+)
LOC110489817 LOC106590247 coding upstream 8762 23189104 ~ 23203359 (+)
LOC110489814 LOC106590296 coding upstream 39712 23162695 ~ 23172409 (+)
LOC110489816 LOC106590246 coding upstream 49816 23157957 ~ 23162305 (+)
LOC110489812 rdh12 coding upstream 65382 23132828 ~ 23146739 (+)
mastl LOC106590301 coding downstream 29630 23248095 ~ 23253786 (+)
LOC110489823 LOC106590302 coding downstream 57048 23275513 ~ 23342095 (+)
LOC110489828 LOC106590304 coding downstream 131943 23350408 ~ 23368812 (+)
LOC110510445 LOC106590311 coding downstream 169071 23387536 ~ 23399121 (+)
LOC110489836 lsm5 coding downstream 221377 23439842 ~ 23445587 (+)
G1270595 NA non-coding upstream 24167 23187703 ~ 23187954 (+)
G1270541 NA non-coding upstream 84557 23122954 ~ 23127564 (+)
G1270489 NA non-coding upstream 162146 23049764 ~ 23049975 (+)
LOC110489808 LOC106590291 non-coding upstream 183557 22962812 ~ 23028566 (+)
G1270416 NA non-coding upstream 308551 22903282 ~ 22903570 (+)
G1270563 NA non-coding downstream 41792 23260257 ~ 23260808 (+)
G1270639 LOC106590307 non-coding downstream 156325 23374790 ~ 23375273 (+)
G1270640 NA non-coding downstream 156930 23375395 ~ 23375630 (+)
G1270647 LOC106590309 non-coding downstream 166289 23384754 ~ 23385062 (+)
slc12a7b LOC106590280 other upstream 1417868 21729755 ~ 21794253 (+)
G1267949 pck2 other upstream 2370723 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 3532016 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 4349610 18859697 ~ 18866106 (+)
G1270643 NA other downstream 158843 23377308 ~ 23377560 (+)
G1270652 NA other downstream 188195 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 227373 23445838 ~ 23451494 (+)
LOC110489839 LOC106590236 other downstream 448006 23666471 ~ 23836438 (+)
G1271852 LOC106584099 other downstream 1027958 24246423 ~ 24250283 (+)

Expression


Co-expression Network