XLOC_031835 (nfil3-3)


Basic Information

Item Value
gene id XLOC_031835
gene name nfil3-3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8153813 ~ 8154866 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062357
TGAGTTTCTCGCCTGCCAACATTACCAAGCTTGTGAGAGTCTAGAGATTTCACACATTCATAAAGTCCCAGACTCGAAGCATGAGGGACCAGAGTGTCCTGCTGGCAGAACAGAAAGCGATGTGTCCTGAAGAAATAAGTCAGGATGGAGCTCTCTCCTACACAGAAGAAACAGTGTCCTTATTAACATCCAGCAGCATGTCAGCTCAATCTTTTCTCTTTCATCCTAATGGTCTGAGATGCAAAGATGGTCCAGAAATGGATGCATCGAGTCGGAAGCGAGAGTCCATCCCTCTTGAGAAAAAAGAAGAAGGTTATCAGGACAAACGCAAAAAGAACAACGAGGCTGCCAGGCGTTTCCGTGAAAAACGCAGAAACAACGACAGAGTGATTGGAAACCAAGTCCTGGCTCTTCTTGAAGACAACGCACGTCTGAAAGCTGAGCTTCTGGCACTGAAGTTAAGATTCGGTTTGATCAAAGATCCCTCAGAAGATCCGGTGCAAATCTTTTCACATATCCAAGAATTTCCGACAATACGAGATACAAACCCACTTACTGTACAGCCATTGCCAATCTCAACGCAAAACTATGGGTTCATCATGCCAGCGGGGTCAAGTATTGGCAATCCAGATATCTCAGTTGCTGATGAAGTAGTAGGAACATATTCATCAGGATATCAAGAAAACAGTCTGAAAAGTCTTCCTCATAAACTGCGTTTTAAGATGGCATCTGGAAATGAAGGCGCTGATGGTTTTCTTCATCCAGTGGAAAATAAGGCTTCGGTTTGTAAGAGCACTGAGGGTTTATGGAGcccgcaaacacacacaatgcCATCAGTTTGTTTAACGGCATATCAGAATAACTCTTCAAGTCAGAGCCTGATCAGATTACAGCTCAGCGCTTTGACTAAAGAAGTGGCCGAGCTCAAAAAAACGCTTCTCTCAAAAGCACTGAAATCAAATCGCACCTGACGTCTGACTCATCCAAAGAAAGAAGGCCCATTTACACATACAAATATAAGGCGGCAGCTGGTTGCTCACTGAAACAGctggcc

Function

symbol description
nfil3-3 Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in circadian rhythm and regulation of transcription, DNA-templated. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007623 circadian rhythm biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-142 Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in circadian rhythm and regulation of transcription, DNA-templated. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000116941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062357 True 1054 mRNA 0.44 1 8153813 8154866

Neighbor

gene id symbol gene type direction distance location
XLOC_031834 klf1 coding upstream 12855 8129543 ~ 8140958 (+)
XLOC_031833 si:ch211-207j7.2 coding upstream 59820 8079974 ~ 8093993 (+)
XLOC_031832 palm3 coding upstream 78964 7977611 ~ 8074849 (+)
XLOC_031831 myh10 coding upstream 495528 7553085 ~ 7658285 (+)
XLOC_031830 pa2g4a coding upstream 602673 7533601 ~ 7551140 (+)
XLOC_031836 nfil3-5 coding downstream 17361 8172227 ~ 8180042 (+)
XLOC_031837 NA coding downstream 109898 8264764 ~ 8271403 (+)
XLOC_031838 gcdha coding downstream 159585 8314451 ~ 8330577 (+)
XLOC_031839 NA coding downstream 184405 8339271 ~ 8346941 (+)
XLOC_031840 NA coding downstream 295445 8450311 ~ 8453642 (+)
XLOC_031828 AL953886.1 non-coding upstream 699982 7453355 ~ 7453831 (+)
XLOC_031826 AL953886.2 non-coding upstream 718113 7429311 ~ 7435700 (+)
XLOC_031820 NA non-coding upstream 945184 7207593 ~ 7208629 (+)
XLOC_031817 AL929341.1 non-coding upstream 1273764 6879927 ~ 6880049 (+)
XLOC_031811 NA non-coding upstream 1412405 6718916 ~ 6741408 (+)
XLOC_031844 CU571254.1 non-coding downstream 536542 8691408 ~ 8691993 (+)
XLOC_031845 CR954285.2 non-coding downstream 550283 8705149 ~ 8997996 (+)

Expression


Co-expression Network