G1271616


Basic Information

Item Value
gene id G1271616
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23839310 ~ 23839530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1452661
gggctctggtcaaaagcagtgcattatataggggatagggtgccatttgggacgtagtccAAGCGCCTCATACCCCTACAGACTTCTGAGAGGTTGTTTTCACATGAACAAAACAAACGTGAAGAAATTAACACAGAGTAAAAACACACTGGAGGAGTGTTTAATTGGGACAAACGAGGGAGGAAAAAAAAGAGCAAAGAAAAAAGTGGGAGAGAAAGCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1452661 True 221 lncRNA 0.43 1 23839310 23839530

Neighbor

gene id symbol gene type direction distance location
LOC110489839 LOC106590236 coding upstream 2872 23666471 ~ 23836438 (+)
gig2e NA coding upstream 109135 23698180 ~ 23730175 (+)
prex2 prex2 coding upstream 180470 23458108 ~ 23658840 (+)
LOC110489836 lsm5 coding upstream 393723 23439842 ~ 23445587 (+)
LOC110510445 LOC106590311 coding upstream 440259 23387536 ~ 23399121 (+)
LOC118938911 NA coding downstream 17883 23857413 ~ 23904392 (+)
sulf1 sulf1 coding downstream 110902 23950432 ~ 24027801 (+)
si:ch211-37e10.2 LOC106590232 coding downstream 346936 24186466 ~ 24192913 (+)
nle1 nle1 coding downstream 374136 24213666 ~ 24229710 (+)
prtfdc1a LOC106590221 coding downstream 764972 24604502 ~ 24618190 (+)
G1270892 NA non-coding upstream 34049 23804025 ~ 23805261 (+)
G1270885 NA non-coding upstream 34587 23781257 ~ 23804723 (+)
G1270849 NA non-coding upstream 115627 23721288 ~ 23723683 (+)
G1270848 NA non-coding upstream 115943 23721089 ~ 23723367 (+)
G1270844 NA non-coding upstream 122748 23712794 ~ 23716562 (+)
G1271622 NA non-coding downstream 4014 23843544 ~ 23843798 (+)
G1271715 NA non-coding downstream 125235 23964765 ~ 23989432 (+)
G1271728 NA non-coding downstream 163902 24003432 ~ 24003680 (+)
G1271732 NA non-coding downstream 173804 24013334 ~ 24013911 (+)
G1271733 NA non-coding downstream 178749 24018279 ~ 24018511 (+)
G1270669 psme2 other upstream 388837 23445838 ~ 23451494 (+)
G1270652 NA other upstream 431308 23406660 ~ 23408002 (+)
G1270643 NA other upstream 461750 23377308 ~ 23377560 (+)
LOC110489812 rdh12 other upstream 702589 23132828 ~ 23146739 (+)
G1271852 LOC106584099 other downstream 406893 24246423 ~ 24250283 (+)
G1272220 LOC106590226 other downstream 548882 24388412 ~ 24403661 (+)
G1272573 NA other downstream 902373 24741879 ~ 24787896 (+)
chchd7 chch7 other downstream 920349 24759852 ~ 24762965 (+)
LOC110489866 tmem241 other downstream 1032322 24869606 ~ 24876724 (+)

Expression


Co-expression Network