XLOC_003184 (ndufs7)


Basic Information

Item Value
gene id XLOC_003184
gene name ndufs7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5842632 ~ 5852715 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006269
ATCGAAGGACTTTTATATACATGGAGGAAGTCGGGTCACGACGGAAGTGGATGATATGGAAAAATGGCGGCGCTGATGGttcCCCGCCTTCCAGCACTTGGCTCTTTTAATTTAAGGGCCTTTTCATCATTTTCTGCTCATAAAAAGCTTCTTCCGACAGACTGCAAAGATGAAAACTCCTCATGTCTGGTCCCATTCAGAGAGAAAAGCACAGCTCTGGCAGCAAAACCAGCTTCAGCCGTGAGCAGCAAGGGGGAGTACGTCATCACCAAGCTGGATGATCTGGTCAACTGGGCGCGCAGAAGCTCCTTATGGCCCATGACGTTTGGCCTGGCGTGCTGTGCAGTAGAGATGATGCACATGGCCGCCCCGCGCTATGACATGGATCGCTTCGGTGTCGTGTTCAGAGCCAGTCCCAGACAGGCTGATGTCATGATCGTAGCTGGGACACTCACCAATAAAATGGCTCCTGCATTGCGGAAGGTGTATGATCAAATGCCAGAGCCCAGATACGTCATTTCCATGGGAAGCTGTGCTAATGGAGGTGGCTACTATCACTACTCTTATTCGGTGGTCCGTGGTTGTGATCGCATTGTTCCAGTGGACATCTACGTCCCagGTTGTCCTCCTACAGCAGAGGCTCTGCTTTATGGAACGCTGCAGTTGCAGAGGAAGATCAAGCGGGAGAAGAGAATGAAAATTTGGTATCGCAAGTGAGCTGTgattctgtctgtgtgtctgttctgaaatgtatatttaataatggTCATTTGTTGTGCTCGGAAGGCTGATTTCTCTGGAGCTGctctggtttgagtccagctCCTCTTTGTAGCTGCAATAAAAGACTTTCTGCTTTAACGCTGAGTGCAAGTTCTGTTTGATGCAGATGTTCTCTCTTTGTCATGCTGTAACTATTGTATTTAAAGGCAAAATGCTCTATAAGTA
>TCONS_00006270
CGGGTCACGACGGAAGTGGATGATATGGAAAAATGGCGGCGCTGATGGGACTTCAGCCGCTGACCTTGTTATTCAACATGACGAAACTAAGACTGACTGACAGATACAAACAACTCCGATTATTTGCAGAACAAAttcCCCGCCTTCCAGCACTTGGCTCTTTTAATTTAAGGGCCTTTTCATCATTTTCTGCTCATAAAAAGCTTCTTCCGACAGACTGCAAAGATGAAAACTCCTCATGTCTGGTCCCATTCAGAGAGAAAAGCACAGCTCTGGCAGCAAAACCAGCTTCAGCCGTGAGCAGCAAGGGGGAGTACGTCATCACCAAGCTGGATGATCTGGTCAACTGGGCGCGCAGAAGCTCCTTATGGCCCATGACGTTTGGCCTGGCGTGCTGTGCAGTAGAGATGATGCACATGGCCGCCCCGCGCTATGACATGGATCGCTTCGGTGTCGTGTTCAGAGCCAGTCCCAGACAGGCTGATGTCATGATCGTAGCTGGGACACTCACCAATAAAATGGCTCCTGCATTGCGGAAGGTGTATGATCAAATGCCAGAGCCCAGATACGTCATTTCCATGGGAAGCTGTGCTAATGGAGGTGGCTACTATCACTACTCTTATTCGGTGGTCCGTGGTTGTGATCGCATTGTTCCAGTGGACATCTACGTCCCagGTTGTCCTCCTACAGCAGAGGCTCTGCTTTATGGAACGCTGCAGTTGCAGAGGAAGATCAAGCGGGAGAAGAGAATGAAAATTTGGTATCGCAAGTGAGCTGTgattctgtctgtgtgtctgttctgaaatgtatatttaataatggTCATTTGTTGTGCTCGGAAGGCTGATTTCTCTGGAGCTGctctggtttgagtccagctCCTC
>TCONS_00006271
AGTGGATGATATGGAAAAATGGCGGCGCTGATGGttcCCCGCCTTCCAGCACTTGGCTCTTTTAATTTAAGGGCCTTTTCATCATTTTCTGCTCATAAAAAGCTTCTTCCGACAGACTGCAAAGATGAAAACTCCTCATGTCTGGTCCCATTCAGAGAGAAAAGCACAGCTCTGGCAGCAAAACCAGCTTCAGCCGTGAGCAGCAAGGGGGAGTACGTCATCACCAAGCTGGATGATCTGGTCAACTGGGCGCGCAGAAGCTCCTTATGGCCCATGACGTTTGGCCTGGCGTGCTGTGCAGTAGAGATGATGCACATGGCCGCCCCGCGCTATGACATGGATCGCTTCGGTGTCGTGTTCAGAGCCAGTCCCAGACAGGCTGATGTCATGATCGTAGCTGGGACACTCACCAATAAAATGGCTCCTGCATTGCGGAAGGTATTGGTgccagttcagttttagcaaacTTCCATTTGACCAGTGGTTTTCAGTTTCGGTCCTCGCCCTGAAATTTATTAAGGGTGCACAAATATGTAGTTTCAGCATCTTTATCACAATGTgtaaatctgcaatagtcacatcccaGAATCAGCAATGTCAAGTTGGAATTATGGTTGATTAATTTGTGGGGTCATCACAAAGTTTAACCCTGAAGTGTTGTGaaagtttttttaaactgtaatgctgtgttcacaccagacgcggaacgcgtggataaatTGCGCTTAAATagctgcgtgaacatttgagtttactcgcttcatacgcgcgtcaaaccccgcttcatttgcgtgtcaaaccccgcttcatttgcgtgtcaaaccccgcttcattcgcgtgtcaaacccc

Function

symbol description
ndufs7 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in aerobic respiration; electron transport coupled proton transport; and mitochondrial respiratory chain complex I assembly. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including eye; immature eye; musculature system; optic tectum; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 3. Orthologous to human NDUFS7 (NADH:ubiquinone oxidoreductase core subunit S7).

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0032981 mitochondrial respiratory chain complex I assembly biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015990 electron transport coupled proton transport biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0048038 quinone binding molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-041111-261 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in aerobic respiration; electron transport coupled proton transport; and mitochondrial respiratory chain complex I assembly. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including eye; immature eye; musculature system; optic tectum; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 3. Orthologous to human NDUFS7 (NADH:ubiquinone oxidoreductase core subunit S7).

Ensembl:

ensembl_id ENSDARG00000074552

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006269 False 948 mRNA 0.48 8 5842632 5852715
TCONS_00006270 False 884 mRNA 0.49 9 5842663 5852595
TCONS_00006271 True 849 lncRNA 0.48 5 5842677 5848072

Neighbor

gene id symbol gene type direction distance location
XLOC_003183 ctdspl3 coding upstream 6346 5817202 ~ 5836286 (+)
XLOC_003182 arid3a coding upstream 31674 5681762 ~ 5810958 (+)
XLOC_003181 r3hdm4 coding upstream 167709 5666325 ~ 5674923 (+)
XLOC_003179 APBA3 coding upstream 182951 5565082 ~ 5659681 (+)
XLOC_003180 NA coding upstream 239911 5602340 ~ 5602721 (+)
XLOC_003185 dazap1 coding downstream 27847 5880562 ~ 5925517 (+)
XLOC_003186 rps15 coding downstream 74135 5926850 ~ 5931622 (+)
XLOC_003187 NA coding downstream 102550 5955265 ~ 5966389 (+)
XLOC_003188 gtpbp3 coding downstream 157269 6009984 ~ 6037759 (+)
XLOC_003189 CT573239.2 coding downstream 217160 6069875 ~ 6074783 (+)
XLOC_003250 BX324177.11 misc downstream 5493088 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5520171 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5533647 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5565318 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5576678 11429393 ~ 11429689 (+)
XLOC_003178 CU855733.1 non-coding upstream 311056 5531443 ~ 5531576 (+)
XLOC_003176 CR559931.1 non-coding upstream 360748 5481753 ~ 5481884 (+)
XLOC_003170 NA non-coding upstream 2059507 3771266 ~ 3783125 (+)
XLOC_003169 NA non-coding upstream 2106829 3615750 ~ 3735803 (+)
XLOC_003195 BX248501.1 non-coding downstream 353254 6205969 ~ 6224120 (+)
XLOC_003198 AL840638.1 non-coding downstream 470283 6322998 ~ 6324302 (+)
XLOC_003199 AL840638.2 non-coding downstream 475263 6327978 ~ 6328093 (+)

Expression


Co-expression Network