G1272672 (LOC106590208)


Basic Information

Item Value
gene id G1272672
gene name LOC106590208
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 24959932 ~ 25027501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1453810
aaaagtcataaaatatatttattcaaCTGATAAAACTTCCACTTCCTGGGAGTAAGTCTTGCTGTTTTTGGGTGGCCCTTTAATTTGTGCTTTGCATAAGACTTTTAAACTCAATTTCATTATCAAATACAGTCATCTGTTTTTGACAGACATGATTCATAATTTCACTTGcattcaacatttttttttttaaattagcatGATTCTGTGGTCCCAAAGTTAAAGGTGACCCTTCGTCATTAGTAATCTGGCCTAAAAGGACCTGACACCCCACTAACACTACAAAGCTTATCAGTTGGCGGGTTGATTCTTCCTTGGCTGTAGTGCCCTATGGCATCGCACAAGGCGACTGTGCGTTTGAAACCTTACAACACAATACATAGGGGCTTGCAAAACAATGCTTAGACGGATATTCCATTACACAATTCATAATGTCTGAAAAGGGTCATAACCTAACCCTCCTGTTGTCATGTCATCAAGACAATACTACAAGTATAGAGGAGCTTTCAGTTGCAAAACACAAGTCAGGAATCACTTAAATATTGAAAAAATAAATCCATTAATATTGCTAATAACACCAAGAGgaacaaacaaataaaacaaatgattgAAGATGAGGCTTTGCTATAAAAACACAGGAATGCAAAGTCATTGTCATGACAGAGCACAATAGCTAACAGTTTGTAGCTGTAACCTCcaattatgtgtgtgtgcttgtatgtaTGTCAATGTGTGTCTGTATATTGTGTATGCACTGTAGGCATGCTAAGTATGAAAATCAATGAGCAGGTCAATGActgtaggcctgtgtgtgtgtgtgtgtgttccagaggagGATGTTCTGGTTCAATTGGGTGTGATGGAAGTGACCACTGTGTTTCATTAAGCTGCCGTGATCCTGAGGCAGGCAGTCAATCAGAGATTAAAGACagactggcagtgtgtgtgtgtgtgtgtgtgtgtggccctacTCACAGATGGTGAAGCAGTTTCATCCACCCCAGGCCTGCCACTGACTGCTAGTCAGGTCTGCTTGTCTTTCTCCAACTGAATCATCCATTACTTGATCCCAGCTACATTTCTATAGTCTTAGCCTCTTCGCaagctttgtttgtttgttgacacatcctctctatctatctatgaaAAACTACAGAGCCCAGTAGCTGTCTACAACATTGGCACCGCAGGCGAAATCCCGGTAAATCTGTCACATTATAGCCACCACTGTGGAGTGCTTCTCTTGTGAAGTACATCAGGGCTTCTCTGGCTTGTTATCACtcaagagaggagaggggatacaAAAAAGGTCAATGCCTCAACTGTTTCCTCTTACCACGTCACATCACAGCAGGGCAACCCTGCACTGGTAGGAATGGGGAGACAGGAAAGGAGGGATTTCATCCTTCTAAAAAATGTAAgggcagacatacagtacatgtgctCTGAGTCTTACTGCAGGGGAGGCACGCCTGGGTGTCTCACTAAGCAGGGGAGGGGATTGGGGGGGCAGGGGGATTTATTTGAAGGATGCACGCACAGCGCGGCCCTTGAGGGGCTGAGGGGGGCGGTAGTTGTCCACCATGCAGCAGGCGGCCTCGCCCTCTCCAGAGAAAAGCAGGCTCCGGAATTTGCCCTGGGCAGGGCTGACGCTGATTGACTCCTTGCAGACGATCCAGGTGACACTCTCCAGCAGAGGAGGTGTGGTCAGGGAGCCGTCGTAAGTCCAGTAGTCTAGGGACTTGGGGAGCAGGATGGTGGGGTCAAAATTCTCGAAAGAGGTCTGCTTGCCCTGTAAACAAAGAGGGAGGCAAATGACAAGTTTACATCAGCAGGTCAGGGATTGGCTCAGAGAATGACAGGTTCCATGCTAGCAGTAGCACCACTTAC
>TU1453812
aaaagtcataaaatatatttattcaaCTGATAAAACTTCCACTTCCTGGGAGTAAGTCTTGCTGTTTTTGGGTGGCCCTTTAATTTGTGCTTTGCATAAGACTTTTAAACTCAATTTCATTATCAAATACAGTCATCTGTTTTTGACAGACATGATTCATAATTTCACTTGcattcaacatttttttttttaaattagcatGATTCTGTGGTCCCAAAGTTAAAGGTGACCCTTCGTCATTAGTAATCTGGCCTAAAAGGACCTGACACCCCACTAACACTACAAAGCTTATCAGTTGGCGGGTTGATTCTTCCTTGGCTGTAGTGCCCTATGGCATCGCACAAGGCGACTGTGCGTTTGAAACCTTACAACACAATACATAGGGGCTTGCAAAACAATGCTTAGACGGATATTCCATTACACAATTCATAATGTCTGAAAAGGGTCATAACCTAACCCTCCTGTTGTCATGTCATCAAGACAATACTACAAGTATAGAGGAGCTTTCAGTTGCAAAACACAAGTCAGGAATCACTTAAATATTGAAAAAATAAATCCATTAATATTGCTAATAACACCAAGAGgaacaaacaaataaaacaaatgattgAAGATGAGGCTTTGCTATAAAAACACAGGAATGCAAAGTCATTGTCATGACAGAGCACAATAGCTAACAGTTTGTAGCTGTAACCTCcaattatgtgtgtgtgcttgtatgtaTGTCAATGTGTGTCTGTATATTGTGTATGCACTGTAGGCATGCTAAGTATGAAAATCAATGAGCAGGTCAATGActgtaggcctgtgtgtgtgtgtgtgtgttccagaggagGATGTTCTGGTTCAATTGGGTGTGATGGAAGTGACCACTGTGTTTCATTAAGCTGCCGTGATCCTGAGGCAGGCAGTCAATCAGAGATTAAAGACagactggcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgactaaaaTAATCATTTTATCTGGGTTGATTTCTTCCACAGTAACGACACAAAAAGATATCAAACATTTTTGGGTAACAGTTAAGTAcgttactgtgattgttttcaattacaa
>TU1453814
aaaagtcataaaatatatttattcaaCTGATAAAACTTCCACTTCCTGGGAGTAAGTCTTGCTGTTTTTGGGTGGCCCTTTAATTTGTGCTTTGCATAAGACTTTTAAACTCAATTTCATTATCAAATACAGTCATCTGTTTTTGACAGACATGATTCATAATTTCACTTGcattcaacatttttttttttaaattagcatGATTCTGTGGTCCCAAAGTTAAAGGTGACCCTTCGTCATTAGTAATCTGGCCTAAAAGGACCTGACACCCCACTAACACTACAAAGCTTATCAGTTGGCGGGTTGATTCTTCCTTGGCTGTAGTGCCCTATGGCATCGCACAAGGCGACTGTGCGTTTGAAACCTTACAACACAATACATAGGGGCTTGCAAAACAATGCTTAGACGGATATTCCATTACACAATTCATAATGTCTGAAAAGGGTCATAACCTAACCCTCCTGTTGTCATGTCATCAAGACAATACTACAAGTATAGAGGAGCTTTCAGTTGCAAAACACAAGTCAGGAATCACTTAAATATTGAAAAAATAAATCCATTAATATTGCTAATAACACCAAGAGgaacaaacaaataaaacaaatgattgAAGATGAGGCTTTGCTATAAAAACACAGGAATGCAAAGTCATTGTCATGACAGAGCACAATAGCTAACAGTTTGTAGCTGTAACCTCcaattatgtgtgtgtgcttgtatgtaTGTCAATGTGTGTCTGTATATTGTGTATGCACTGTAGGCATGCTAAGTATGAAAATCAATGAGCAGGTCAATGActgtaggcctgtgtgtgtgtgtgtgtgttccagaggagGATGTTCTGGTTCAATTGGGTGTGATGGAAGTGACCACTGTGTTTCATTAAGCTGCCGTGATCCTGAGGCAGGCAGTCAATCAGAGATTAAAGACagactggcagtgtgtgtgtgtgtgtgtgtgtgtgtggccctacTCACAGATGGTGAAGCAGTTTCATCCACCCCAGGCCTGCCACTGACTGCTAGTCAGGTCTGCTTGTCTTTCTCCAACTGAATCATCCATTACTTGATCCCAGCTACATTTCTATAGTCTTAGCCTCTTCGCaagctttgtttgtttgttgacacatcctctctatctatctatgaaAAACTACAGAGCCCAGTAGCTGTCTACAACATTGGCACCGCAGGCGAAATCCCGGTAAATCTGTCACATTATAGCCACCACTGTGGAGTGCTTCTCTTGTGAAGTACATCAGGGCTTCTCTGGCTTGTTATCACtcaagagaggagaggggatacaAAAAAGGTCAATGCCTCAACTGTTTCCTCTTACCACGTCACATCACAGCAGGGCAACCCTGCACTGGTAGGAATGGGGAGACAGGAAAGGAGGGATTTCATCCTTCTAAAAAATGTAAgggcagacatacagtacatgtgctCTGAGTCTTACTGCAGGGGAGGCACGCCTGGGTGTCTCACTAAGCAGGGGAGGGGATTGGGGGGGCAGGGGGATTTATTTGAAGGATGCACGCACAGCGCGGCCCTTGAGGGGCTGAGGGGGGCGGTAGTTGTCCACCATGCAGCAGGCGGCCTCGCCCTCTCCAGAGAAAAGCAGGCTCCGGAATTTGCCCATCTgtCTGGGCAGGGCTGACGCTGATTGACTCCTTGCAGACGATCCAGGTGACACTCTCCAGCAGAGGAGGTGTGGTCAGGGAGCCGTCGTAAGTCCAGTAGTCTAGGGACTTGGGGAGCAGGATGGTGGGGTCAAAATTCTCGAAAGAGGTCTGCTTGCCCTGTAAACAAAGAGGGAGGCAAATGACAAGTTTACATCAGCAGGTCAGGGATTGGCTCAGAGAATGACAGGTTCCATGCTAGCAGTAGCACCACTTAC

Function

NR:

description
PREDICTED: carbonic anhydrase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1453810 False 1890 lncRNA 0.45 3 24959932 24963041
TU1453812 False 1081 lncRNA 0.38 2 24959932 25027501
TU1453814 True 1899 TUCP 0.45 3 24959932 24963041
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489866 tmem241 coding upstream 83208 24869606 ~ 24876724 (+)
LOC110489863 sdcbp coding upstream 118969 24836607 ~ 24840963 (+)
LOC110489862 fam110b coding upstream 129997 24826608 ~ 24829935 (+)
chchd7 chch7 coding upstream 196969 24759852 ~ 24762965 (+)
LOC110489855 arhgap21 coding upstream 228439 24625469 ~ 24731493 (+)
zgc:111976 LOC106590202 coding downstream 625237 25652738 ~ 25662668 (+)
LOC110489875 LOC106590201 coding downstream 638222 25665723 ~ 25703391 (+)
LOC118938912 NA coding downstream 779173 25806674 ~ 25820021 (+)
LOC118938913 NA coding downstream 824319 25851820 ~ 25853297 (+)
LOC110489881 LOC106590196 coding downstream 907676 25935177 ~ 26048644 (+)
G1272702 NA non-coding upstream 40138 24919563 ~ 24919794 (+)
G1272701 NA non-coding upstream 40531 24919182 ~ 24919401 (+)
G1272698 NA non-coding upstream 42635 24917029 ~ 24917297 (+)
G1272694 NA non-coding upstream 48844 24910849 ~ 24911088 (+)
G1272688 NA non-coding upstream 56940 24902708 ~ 24902992 (+)
G1272812 NA non-coding downstream 78254 25105755 ~ 25106041 (+)
G1272813 NA non-coding downstream 79059 25106560 ~ 25106872 (+)
G1272819 NA non-coding downstream 85515 25113016 ~ 25113243 (+)
G1272835 NA non-coding downstream 106992 25134493 ~ 25134699 (+)
G1272846 NA non-coding downstream 120055 25147556 ~ 25147786 (+)
G1272573 NA other upstream 216127 24741879 ~ 24787896 (+)
G1272220 LOC106590226 other upstream 556271 24388412 ~ 24403661 (+)
G1271852 LOC106584099 other upstream 709649 24246423 ~ 24250283 (+)
G1274765 NA other downstream 1336777 26364278 ~ 26365146 (+)
G1274830 NA other downstream 1412510 26440011 ~ 26442387 (+)
kif9 kif9 other downstream 1933290 26960749 ~ 26974049 (+)
G1275572 NA other downstream 2073808 27101309 ~ 27102027 (+)
G1276288 NA other downstream 2826117 27853618 ~ 27854013 (+)
rbis cssa29h8orf59 coding downstream 5263 24968304 ~ 24976522 (+)

Expression

G1272672(LOC106590208) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 800.
End of interactive chart.

G1272672(LOC106590208) Expression in each Bioproject

Bar chart with 20 bars.
G1272672(LOC106590208) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network