XLOC_031845 (CR954285.2)


Basic Information

Item Value
gene id XLOC_031845
gene name CR954285.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8705149 ~ 8997996 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062372
GTTGGCAAAAATTagttgataaaaacaaattaagacAGATAATGCAGATGCCAATGAATGTATAAGTTGAGAATTCCTCATTACCTCGACATTTCAGATCTTTACACCTCTCTGGCTTATTTGCATCCACCCGGGCTGATCGTCTCCTTCATCACTTTCAGAAATATGCCTGTAATCCTGACTGGCCTCACAGTGTCTGTTTCTCAGCCAGCACCATGCCGACAGGAGCTTGAGAAACGGTCTCTGAAAAAGAGGCGTATATCAAACGCAGGAATGCTTTCTGAGTAAAGTCCGAGACATATGCGGAGCTCAGGGAAGACCAGGATCCCCCATGTGAGCTGCATTCCAGATTCAAAGCAAAGCGTGTGTGAGCATGGTGTGGGCTCAGGACACATACAAAGcttttcgtCTTTGAAGACCGAACCTACACATCTTATATTAACCCCAGAAGCAGTGAATCACTCGCCCTGCTGCTTCTGTCTGCGCAGCATCTGCTGTGCTTGTTATTGAGATTCCCCGCTGACAGCTGGGCTCTGGAAAACCTATGGAGGAGAAGGAATCCTGGCGTTCCTGGCACTGTCATGTGGGAGGAAGATGTTTCAGGCTCGCAGCTCAGACTAGGTCAATAGCACGTCCTGTTACAGCCCTGTTCTCTGTCCAGCTGTGCAGTGATTCATTTCAGAGCTTGAGGGATCGAAACGGCGCTCAGATCAACAGCAGCGGGATTTTTGAGATTTTAGAAGGCTCTTCGGTGAGGAGTGGAATCTGCTGTTTTTTCCGACAGCTCAA
>TCONS_00064809
AAGCGTGTGTGAGCATGGTGTGGGCTCAGGACACATACAAAGcttttcgtCTTTGAAGACCGAACCTACACATCTTATATTAACCCCAGAAGCAGTGAATCACTCGCCCTGCTGCTTCTGTCTGCGCAGCATCTGCTGTGCTTGTTATTGAGATTCCCCGCTGACAGCTGGGCTCTGGAAAACCTATGGAGGAGAAGGAATCCTGGCGTTCCTGGCACTGTCATGTGGGAGGAAGGTGGGAATCAGTACTTGCAGCAAGTCATGAGAATAATTTATTTCCTTACAACCTCAAACTCCCCTCAAACATGCATCactacgcgcacacacacacacacacacacacacgcactcacacaaaGCCCTGGTGTGGATTATTCATAACTGTGAGAGAAAATCACCTTTAGAAGCCAGGCTTATTTATAAGGATTCACACTCCTTTACTGATATAAGTTTGCTCATTATATAAAgctttttttgtgcttttgatGAGAATATAGAAGTCTGTAAAAGTACCTCAACTACTTTTAAAGTCTGAATCATTGCATTAGATTAAATATCGAACAAAATGGCATTTATTTCAAGAGAACGAGTTTGTACACTCCATCAAGATGTGCTGATCAGTGACTGTTGGCTGTTCCATGCACACGGTTTAAAACCAAGGGGGTCTGTGCTTTTGCAGTTTTGTGTTGTCCCAAATTTTTTAAGTAATTTCCCCCTCCATGTTACaacgtcaacgcttcccattcactttgaatgggtgacgtcaggcattgccgaactgcattgtggatctgtcggcgccacttcagaggcgttgctctctgcagaagttgggactagctcaacttttcaagcgcagaCGGAagattcagccaatcagatcgctgtatgcaaatacaccagctagaccgtgggctattgctgactgaatttcattggctgacgctgctatgacgattgcgtcagccccaactGCAAAAACACCTTCAGTCAAGAACcctcgtgtgaatggggcgttatgcAGGCCAAAac
>TCONS_00064810
TGGGGCCTCCTCCTCTACTTCAGcttttcgtCTTTGAAGACCGAACCTACACATCTTATATTAACCCCAGAAGCAGTGAATCACTCGCCCTGCTGCTTCTGTCTGCGCAGCATCTGCTGTGCTTGTTATTGAGATTCCCCGCTGACAGCTGGGCTCTGGAAAACCTATGGAGGAGAAGGAATCCTGGCGTTCCTGGCACTGTCATGTGGGAGGAAGATGTTTCAGGCTCGCAGCTCAGACTAGGTCAATAGCACGTCCTGTTACAGCCCTGTTCTCTGTCCAGCTGTGCAGTGATTCATTTCAGAGCTTGAGGGATCGAAACGGCGCTCAGATCAACAGCAGCGGGATTTTTGAGATTTTAGAAGGCTCTTCGGTGAGGAGTGGAATCTGCTGTTTTTTCCGACAGCTCAAAGACGCTGTACATTTTCCAAGATGCATTATACAAGGAGTTGTGCTGTTGCCAAACTTCCACATGCACTGACCTGTCCTGAATTGACCTGCATAGGCAAGGCAAGGACTCTCAGCACCGTGTTCTTTGAAGCCAGAGTGCTTCTCTTTGAAGatccctctctctccctcctcATCTTCATTAAGCCTTCGTTCAGCAGCAGGAGTAATAGGAGTGCAGAGAGCGACATGTTCTCAGCGGGAGAGAAGGGGTATCGGAGCCCCATTAGTGTGCAGGTAGGCAGCCTCTGTCAGTGTTAATTTCTGCACATGTCTTCCACCGCGAGTCGTCATGCTTCTAAAATAATCTGCCTTTGAAAGTGTGACAGAGTGAAGAGAAGCCAGGGAGGCAAAAATCACACTGCGCTTTATTGCTCTAAATCTATATCACATCTGTAAGTGTATGAAAACTCAGAGAGGTGGACAGGAGGGAGAAGAGGAACCGGTTTCACTCTGAATCTCCTGCCGCTCTACTGAAAAGGGCTCAATctttatgaatttaaatgagGCATGATGCTCCTCTGCAGTCCCCTCGCCTGAAACCAGTCTGTTTATGTTGTGATTTGAACTGTGTTGCTTGTCTCTAATGGTTTTCTTTTCCACCGTGATGTGCATGGGGAAACAATAAGGCAGTCTGTGCCTGAAGTATCCACATTCTCTACTGGCGAACATTCATTTTCTGATGAAAGATTTTTggcataaatgtaaaatgttttattaagcaCTGT
>TCONS_00064601
CATGCACTGACCTGTCCTGAATTGACCTGCATAGGCAAGGCAAGGACTCTCAGCACCGTGTTCTTTGAAGCCAGAGTGCTTCTCTTTGAAGatccctctctctccctcctcATCTTCATTAAGCCTTCGTTCAGCAGCAGGAGTAATAGGAGTGCAGAGAGCGACATGTTCTCAGCGGGAGAGAAGGGGTATCGGAGCCCCATTAGTGTGCAGGTAGGCAGCCTCTGTCAGTGTTAATTTCTGCACATGTCTTCCACCGCGAGTCGTCATGCTTCTAAAATAATCTGCCTTTGAAAGTGTGACAGAGTGAAGAGAAGCCAGGGAGGCAAAAATCACACTGCGCTTTATTGCTCTAAATCTATATCACATCTGTAAGTGTATGAAAACTCAGAGAGGTGGACAGGAGGGAGAAGAGGAACCGGTTTCACTCTGAATCTCCTGCCGCTCTACTGAAAAGGGCTCAATctttatgaatttaaatgagGCATGATGCTCCTCTGCAGTCCCCTCGCCTGAAACCAGTCTGTTTATGTTGTGATTTGAACTGTGTTGCTTGTCTCTAATGGTTTTCTTTTCCACCGTGATGTGCATGGGGAAACAATAAGGCAGTCTGTGCCTGAAGTATCCACATTCTCTACTGGCGAACATTCATTTTCTGATGAAAGATTTTTggcataaatgtaaaatgttttattaagcaCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096297

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062372 False 789 lncRNA 0.48 4 8705149 8871084
TCONS_00064809 False 1032 lncRNA 0.45 2 8708788 8741728
TCONS_00064810 False 1175 lncRNA 0.47 5 8710342 8997996
TCONS_00064601 True 702 lncRNA 0.45 2 8909706 8997994

Neighbor

gene id symbol gene type direction distance location
XLOC_031844 CU571254.1 coding upstream 13156 8691408 ~ 8691993 (+)
XLOC_031843 usp40 coding upstream 21079 8652310 ~ 8684070 (+)
XLOC_031842 tspeara coding upstream 54828 8622228 ~ 8650321 (+)
XLOC_031841 ube2g2 coding upstream 95754 8598428 ~ 8609395 (+)
XLOC_031840 NA coding upstream 251507 8450311 ~ 8453642 (+)
XLOC_031847 vps16 coding downstream 109067 9107063 ~ 9130843 (+)
XLOC_031848 rgn coding downstream 132993 9130989 ~ 9139986 (+)
XLOC_031849 zgc:64065 coding downstream 144735 9142731 ~ 9150376 (+)
XLOC_031850 zgc:64065 coding downstream 157256 9155252 ~ 9161393 (+)
XLOC_031851 NA coding downstream 165011 9163007 ~ 9173106 (+)
XLOC_031839 NA non-coding upstream 358208 8339271 ~ 8346941 (+)
XLOC_031837 NA non-coding upstream 433746 8264764 ~ 8271403 (+)
XLOC_031828 AL953886.1 non-coding upstream 1251318 7453355 ~ 7453831 (+)
XLOC_031857 NA non-coding downstream 539674 9537670 ~ 9539292 (+)
XLOC_031858 NA non-coding downstream 653255 9651251 ~ 9666598 (+)
XLOC_031867 NA non-coding downstream 1014265 10012261 ~ 10013022 (+)
XLOC_031868 NA non-coding downstream 1026654 10024650 ~ 10036969 (+)

Expression


Co-expression Network