G1274532 (LOC106590196)


Basic Information

Item Value
gene id G1274532
gene name LOC106590196
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26046058 ~ 26048599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1455800
GCTTCTTCAAAATAAATAAGAATACTTTTTTGATGAACATGTTGACTTCCAATGGGAACAGTTCAAAAGGCATTTTGTTTGAAATAAAATGCTCCCTTTGCCTCCCGTATTCTCGCCATACTGTGTGTCCTTCATAATcaatgaacaaaatgtgcaccatGGGCGGACATGATTTCATTCTGCAGAATATTTTTGGGACAAGCTGATTTACTGCAGTTACTGTGAGCAACAGGAAAtacttgttgttgttgctgttgttgttgttatgtaaCCATAGCCGCTGGAAGTAggatgctgagggtgctgcagcatttaaaaaaaacaaacaaaaaaaaaacattggactaaaaataatatattaatacaaatatatatgttttaaagTCTCTCACAAAAGTAATGAATGCactgggtctttactagtcctgtattagtggactgATATAGCCGTCTATAGCGTGCACAAAACaattatgcccccccccccccccctccggcgAAAAATAAATACATCGCAGCACCCCTAAACATCTTCCTGCAGCTATGTACGTGACCCATCTCAGCCCAGCACAACAATCCATTCAAACAAGCCTTCACTTTATTCAAGCCTAAGTTGCAAATATCTTCCACGGTCCAACACAACGTCAACGGAATTCCTTGGGCAAGAGTAAATGTTGGCCCGTGAATTCCAAATTCCTTTGCAAATAATGAAAAATACTTTATTTGAAGGTTCAATCCGGATATGGATTTTCCATCTCAACCATAATGTTACATCATTGTTATTACATCAGTATTACATAAAATTGGACTTGGCAAATAGAAAGAGTCAGGCCTAAGGAAAATAGACTCAAAGGCAAACACCACATAGTAACATCTGTAAAATGCTAGGTTAAGAGGAGAAAGTAAACACTTTCCTGCACCTATCGAAGGATACACACAGATCAGTTGCATTATTTTTCTCAGACCACAGTACATACAATTTCTTGTAGACACGAGGTCAGATTTCAAAACTCTCAAGAATTTAACAGCAGTGGTTCCTCTTCAACCGATCTGTACACTTGACTACTTGTCACAAATAGCACTGAAAGATATGACTGACTGATTTctctttgtttgttttttctccgCGAGTCTGTGACGAAGAGTTTTTCCTTCGtaatctgaaaaacaccaaacaaaaacaaaacattgacACTCTTGACGACTTTCAAATGAATAGTTGAGTGACTACTCTACTGATTAGCCGCCGGGGACCAAGCACTTTAGgagaaagtgtttttttttttaacaaaaagaGCAAGGGAATGCATCAAAACAAGACTGCTGGGTCTGTGCCCATCACAGGAATGAGAGAACAGGTGCCTCcacataaatatactgtagcctaccacGTACACAGTCGATTGCTGGACCCCAGCCCAACTTTGAAACCTTTTAATGTCTTTGCTCACAAGGTTTCCTTTTCAGTCAAGTCACTTTTGAAGTTACATGTCAAAACTTGCCAAGTCACCCTTTTTGAAAATCCAAAATCCAAGGCAAGTAAACAAACCAAACCTTTTAAGTcaagattttttttgtttcttacttttgtTCTCAGACTCTTGCACCCTGCACTTTGGCAGACTAGTTgttaattatattttttttattacaatacattaccatTGTTGATTTTTGTATAAGTTCGGGAAAATGTTGGCTATGAGAACACGCTTTTGCCGTCGCCGTAGAGGTCGGCTAGCTTTTTGAAGCGCGGCCCCCAGTTGCTGAGATAGTCGTAGTTCTGCTCTGAGTCTGTACTTAGTGACTCCAGGGAGCTTAACGACTCAGCTACCGAACCATTCCCCTCAAAGGCGTACGTCTGCAAAGAGTCATACGGCGGAGCTGATGGATCAACATCTGCGTCCTTCAGCCGGTCCCAAATGAACTCTCGGAACACCACGTTGTCCGGCAGGGTCTTGTAGACGGGAAGCGAGGAGGAGGATCTCGGGTAGGGGAAGAAGGTGGGGGTGTCAGGGGTGACGTCTCGCCGGACCTTGGGGTCTCTGATGACATTGAGGTTGCGGAGGGCCACCATGTCGAAGGCCTcggtgtcctcctctcctccaccttcaTCGTCGTAGCGGACGATGTTCTCCCTCacgtccctctcctcctccaggatCAAGGGCTCCTTCTTCCTCCGACGCATCGACACAATCAGCAGCACCATCACTGAACAAGGAAAGAGAAGAGTCTGAGTCCATGTTTATTAACCATCAGCATTAGGATACTTACTCAATATAAAGGCACAGTACATTTGGATGATAAATCTACGGAAAATAATAGCCCATATTTGATGAAtgtgaaaataaaacatttgaaacaGTGTCTTTGCATCAATACatttctct
>TU1455797
TCTTTTGAGGAACAGAATGTCCTTTTTATTGTCAGCAAAAAGGATAAAAACATCTGCCAACATCATATAATTCTGCTTCTTCAAAATAAATAAGAATACTTTTTTGATGAACATGTTGACTTCCAATGGGAACAGTTCAAAAGGCATTTTGTTTGAAATAAAATGCTCCCTTTGCCTCCCGTATTCTCGCCATACTGTGTGTCCTTCATAATcaatgaacaaaatgtgcaccatGGGCGGACATGATTTCATTCTGCAGAATATTTTTGGGACAAGCTGATTTACTGCAGTTACTGTGAGCAACAGGAAAtacttgttgttgttgctgttgttgttgttatgtaaCCATAGCCGCTGGAAGTAggatgctgagggtgctgcagcatttaaaaaaaacaaacaaaaaaaaaacattggactaaaaataatatattaatacaaatatatatgttttaaagTCTCTCACAAAAGTAATGAATGCactgggtctttactagtcctgtattagtggactgATATAGCCGTCTATAGCGTGCACAAAACaattatgcccccccccccccccctccggcgAAAAATAAATACATCGCAGCACCCCTAAACATCTTCCTGCAGCTATGTACGTGACCCATCTCAGCCCAGCACAACAATCCATTCAAACAAGCCTTCACTTTATTCAAGCCTAAGTTGCAAATATCTTCCACGGTCCAACACAACGTCAACGGAATTCCTTGGGCAAGAGTAAATGTTGGCCCGTGAATTCCAAATTCCTTTGCAAATAATGAAAAATACTTTATTTGAAGGTTCAATCCGGATATGGATTTTCCATCTCAACCATAATGTTACATCATTGTTATTACATCAGTATTACATAAAATTGGACTTGGCAAATAGAAAGAGTCAGGCCTAAGGAAAATAGACTCAAAGGCAAACACCACATAGTAACATCTGTAAAATGCTAGGTTAAGAGGAGAAAGTAAACACTTTCCTGCACCTATCGAAGGATACACACAGATCAGTTGCATTATTTTTCTCAGACCACAGTACATACAATTTCTTGTAGACACGAGGTCAGATTTCAAAACTCTCAAGAATTTAACAGCAGTGGTTCCTCTTCAACCGATCTGTACACTTGACTACTTGTCACAAATAGCACTGAAAGATATGACTGACTGATTTctctttgtttgttttttctccgCGAGTCTGTGACGAAGAGTTTTTCCTTCGtaatctgaaaaacaccaaacaaaaacaaaacattgacACTCTTGACGACTTTCAAATGAATAGTTGAGTGACTACTCTACTGATTAGCCGCCGGGGACCAAGCACTTTAGgagaaagtgtttttttttttaacaaaaagaGCAAGGGAATGCATCAAAACAAGACTGCTGGGTCTGTGCCCATCACAGGAATGAGAGAACAGGTGCCTCcacataaatatactgtagcctaccacGTACACAGTCGATTGCTGGACCCCAGCCCAACTTTGAAACCTTTTAATGTCTTTGCTCACAAGGTTTCCTTTTCAGTCAAGTCACTTTTGAAGTTACATGTCAAAACTTGCCAAGTCACCCTTTTTGAAAATCCAAAATCCAAGGCAAGTAAACAAACCAAACCTTTTAAGTcaagattttttttgtttcttacttttgtTCTCAGACTCTTGCACCCTGCACTTTGGCAGACTAGTTgttaattatattttttttattacaatacattaccatTGTTGATTTTTGTATAAGTTCGGGAAAATGTTGGCTATGAGAACACGCTTTTGCCGTCGCCGTAGAGGTCGGCTAGCTTTTTGAAGCGCGGCCCCCAGTTGCTGAGATAGTCGTAGTTCTGCTCTGAGTCTGTACTTAGTGACTCCAGGGAGCTTAACGACTCAGCTACCGAACCATTCCCCTCAAAGGCGTACGTCTGCAAAGAGTCATACGGCGGAGCTGATGGATCAACATCTGCGTCCTTCAGCCGGTCCCAAATGAACTCTCGGAACACCACGTTGTCCGGCAGGGTCTTGTAGACGGGAAGCGAGGAGGAGGATCTCGGGTAGGGGAAGAAGGTGGGGGTGTCAGGGGTGACGTCTCGCCGGACCTTGGGGTCTCTGATGACATTGAGGTTGCGGAGGGCCACCATGTCGAAGGCCTcggtgtcctcctctcctccaccttcaTCGTCGTAGCGGACGATGTTCTCCCTCacgtccctctcctcctccaggatCAAGGGCTCCTTCTTCCTCCGACGCATCGACACAATCAG
>TU1455798
CCAACATCATATAATTCTGCTTCTTCAAAATAAATAAGAATACTTTTTTGATGAACATGTTGACTTCCAATGGGAACAGTTCAAAAGGCATTTTGTTTGAAATAAAATGCTCCCTTTGCCTCCCGTATTCTCGCCATACTGTGTGTCCTTCATAATcaatgaacaaaatgtgcaccatGGGCGGACATGATTTCATTCTGCAGAATATTTTTGGGACAAGCTGATTTACTGCAGTTACTGTGAGCAACAGGAAAtacttgttgttgttgctgttgttgttgttatgtaaCCATAGCCGCTGGAAGTAggatgctgagggtgctgcagcatttaaaaaaaacaaacaaaaaaaaaacattggactaaaaataatatattaatacaaatatatatgttttaaagTCTCTCACAAAAGTAATGAATGCactgggtctttactagtcctgtattagtggactgATATAGCCGTCTATAGCGTGCACAAAACaattatgcccccccccccccccctccggcgAAAAATAAATACATCGCAGCACCCCTAAACATCTTCCTGCAGCTATGTACGTGACCCATCTCAGCCCAGCACAACAATCCATTCAAACAAGCCTTCACTTTATTCAAGCCTAAGTTGCAAATATCTTCCACGGTCCAACACAACGTCAACGGAATTCCTTGGGCAAGAGTAAATGTTGGCCCGTGAATTCCAAATTCCTTTGCAAATAATGAAAAATACTTTATTTGAAGGTTCAATCCGGATATGGATTTTCCATCTCAACCATAATGTTACATCATTGTTATTACATCAGTATTACATAAAATTGGACTTGGCAAATAGAAAGAGTCAGGCCTAAGGAAAATAGACTCAAAGGCAAACACCACATAGTAACATCTGTAAAATGCTAGGTTAAGAGGAGAAAGTAAACACTTTCCTGCACCTATCGAAGGATACACACAGATCAGTTGCATTATTTTTCTCAGACCACAGTACATACAATTTCTTGTAGACACGAGGTCAGATTTCAAAACTCTCAAGAATTTAACAGCAGTGGTTCCTCTTCAACCGATCTGTACACTTGACTACTTGTCACAAATAGCACTGAAAGATATGACTGACTGATTTctctttgtttgttttttctccgCGAGTCTGTGACGAAGAGTTTTTCCTTCGtaatctgaaaaacaccaaacaaaaacaaaacattgacACTCTTGACGACTTTCAAATGAATAGTTGAGTGACTACTCTACTGATTAGCCGCCGGGGACCAAGCACTTTAGgagaaagtgtttttttttttaacaaaaagaGCAAGGGAATGCATCAAAACAAGACTGCTGGGTCTGTGCCCATCACAGGAATGAGAGAACAGGTGCCTCcacataaatatactgtagcctaccacGTACACAGTCGATTGCTGGACCCCAGCCCAACTTTGAAACCTTTTAATGTCTTTGCTCACAAGGTTTCCTTTTCAGTCAAGTCACTTTTGAAGTTACATGTCAAAACTTGCCAAGTCACCCTTTTTGAAAATCCAAAATCCAAGGCAAGTAAACAAACCAAACCTTTTAAGTcaagattttttttgtttcttacttttgtTCTCAGACTCTTGCACCCTGCACTTTGGCAGACTAGTTgttaattatattttttttattacaatacattaccatTGTTGATTTTTGTATAAGTTCGGGAAAATGTTGGCTATGAGAACACGCTTTTGCCGTCGCCGTAGAGGTCGGCTAGCTTTTTGAAGCGCGGCCCCCAGTTGCTGAGATAGTCGTAGTTCTGCTCTGAGTCTGTACTTAGTGACTCCAGGGAGCTTAACGACTCAGCTACCGAACCATTCCCCTCAAAGGCGTACGTCTGCAAAGAGTCATACGGCGGAGCTGATGGATCAACATCTGCGTCCTTCAGCCGGTCCCAAATGAACTCTCGGAACACCACGTTGTCCGGCAGGGTCTTGTAGACGGGAAGCGAGGAGGAGGATCTCGGGTAGGGGAAGAAGGTGGGGGTGTCAGGGGTGACGTCTCGCCGGACCTTGGGGTCTCTGATGACATTGAGGTTGCGGAGGGCCACCATGTCGAAGGCCTcggtgtcctcctctcctccaccttcaTCGTCGTAGCGGACGATGTTCTCCCTCacgtccctctcctcctccaggatCAAGGGCTCCTTCTTCCTCCGACGCATCGACACAATCAG
>TU1455799
CCTTGATAATGTAATTAAACACTGACATATCCTAGATGTTTTAATGTTCAAAAGAACTGAAAGAAGTCCCCTCAGTCTTTTGAGGAACAGAATGTCCTTTTTATTGTCAGCAAAAAGGATAAAAACATCTGCCAACATCATATAATTCTGCTTCTTCAAAATAAATAAGAATACTTTTTTGATGAACATGTTGACTTCCAATGGGAACAGTTCAAAAGGCATTTTGTTTGAAATAAAATGCTCCCTTTGCCTCCCGTATTCTCGCCATACTGTGTGTCCTTCATAATcaatgaacaaaatgtgcaccatGGGCGGACATGATTTCATTCTGCAGAATATTTTTGGGACAAGCTGATTTACTGCAGTTACTGTGAGCAACAGGAAAtacttgttgttgttgctgttgttgttgttatgtaaCCATAGCCGCTGGAAGTAggatgctgagggtgctgcagcatttaaaaaaaacaaacaaaaaaaaaacattggactaaaaataatatattaatacaaatatatatgttttaaagTCTCTCACAAAAGTAATGAATGCactgggtctttactagtcctgtattagtggactgATATAGCCGTCTATAGCGTGCACAAAACaattatgcccccccccccccccctccggcgAAAAATAAATACATCGCAGCACCCCTAAACATCTTCCTGCAGCTATGTACGTGACCCATCTCAGCCCAGCACAACAATCCATTCAAACAAGCCTTCACTTTATTCAAGCCTAAGTTGCAAATATCTTCCACGGTCCAACACAACGTCAACGGAATTCCTTGGGCAAGAGTAAATGTTGGCCCGTGAATTCCAAATTCCTTTGCAAATAATGAAAAATACTTTATTTGAAGGTTCAATCCGGATATGGATTTTCCATCTCAACCATAATGTTACATCATTGTTATTACATCAGTATTACATAAAATTGGACTTGGCAAATAGAAAGAGTCAGGCCTAAGGAAAATAGACTCAAAGGCAAACACCACATAGTAACATCTGTAAAATGCTAGGTTAAGAGGAGAAAGTAAACACTTTCCTGCACCTATCGAAGGATACACACAGATCAGTTGCATTATTTTTCTCAGACCACAGTACATACAATTTCTTGTAGACACGAGGTCAGATTTCAAAACTCTCAAGAATTTAACAGCAGTGGTTCCTCTTCAACCGATCTGTACACTTGACTACTTGTCACAAATAGCACTGAAAGATATGACTGACTGATTTctctttgtttgttttttctccgCGAGTCTGTGACGAAGAGTTTTTCCTTCGtaatctgaaaaacaccaaacaaaaacaaaacattgacACTCTTGACGACTTTCAAATGAATAGTTGAGTGACTACTCTACTGATTAGCCGCCGGGGACCAAGCACTTTAGgagaaagtgtttttttttttaacaaaaagaGCAAGGGAATGCATCAAAACAAGACTGCTGGGTCTGTGCCCATCACAGGAATGAGAGAACAGGTGCCTCcacataaatatactgtagcctaccacGTACACAGTCGATTGCTGGACCCCAGCCCAACTTTGAAACCTTTTAATGTCTTTGCTCACAAGGTTTCCTTTTCAGTCAAGTCACTTTTGAAGTTACATGTCAAAACTTGCCAAGTCACCCTTTTTGAAAATCCAAAATCCAAGGCAAGTAAACAAACCAAACCTTTTAAGTcaagattttttttgtttcttacttttgtTCTCAGACTCTTGCACCCTGCACTTTGGCAGACTAGTTgttaattatattttttttattacaatacattaccatTGTTGATTTTTGTATAAGTTCGGGAAAATGTTGGCTATGAGAACACGCTTTTGCCGTCGCCGTAGAGGTCGGCTAGCTTTTTGAAGCGCGGCCCCCAGTTGCTGAGATAGTCGTAGTTCTGCTCTGAGTCTGTACTTAGTGACTCCAGGGAGCTTAACGACTCAGCTACCGAACCATTCCCCTCAAAGGCGTACGTCTGCAAAGAGTCATACGGCGGAGCTGATGGATCAACATCTGCGTCCTTCAGCCGGTCCCAAATGAACTCTCGGAACACCACGTTGTCCGGCAGGGTCTTGTAGACGGGAAGCGAGGAGGAGGATCTCGGGTAGGGGAAGAAGGTGGGGGTGTCAGGGGTGACGTCTCGCCGGACCTTGGGGTCTCTGATGACATTGAGGTTGCGGAGGGCCACCATGTCGAAGGCCTcggtgtcctcctctcctccaccttcaTCGTCGTAGCGGACGATGTTCTCCCTCacgtccctctcctcctccaggatCAAGGGCTCCTTCTTCCTCCGACGCATCGACACAATCAG

Function

NR:

description
cadherin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1455800 False 2393 lncRNA 0.42 1 26046058 26048450
TU1455797 False 2277 TUCP 0.42 1 26046248 26048524
TU1455798 False 2221 TUCP 0.42 1 26046248 26048468
TU1455799 True 2352 lncRNA 0.42 1 26046248 26048599

Neighbor

gene id symbol gene type direction distance location
LOC110489880 LOC106590197 coding downstream 244806 25786208 ~ 25801252 (-)
LOC110489878 LOC106590198 coding downstream 271117 25770924 ~ 25774941 (-)
LOC110489879 LOC106590199 coding downstream 277022 25746689 ~ 25769036 (-)
LOC110489876 LOC106590200 coding downstream 309180 25717772 ~ 25736878 (-)
ralaa LOC106590204 coding downstream 399543 25620868 ~ 25646515 (-)
cdh19 LOC106590195 coding upstream 43733 26092332 ~ 26114459 (-)
trnaa-ugc-65 NA coding upstream 76142 26124741 ~ 26124814 (-)
LOC110489883 LOC106590194 coding upstream 198543 26247142 ~ 26252430 (-)
LOC110489884 tmx3 coding upstream 391396 26439995 ~ 26506930 (-)
pxdc1b pxdc1 coding upstream 465080 26513679 ~ 26528616 (-)
G1274529 NA non-coding downstream 2970 26042849 ~ 26043088 (-)
G1274528 LOC105006661 non-coding downstream 3445 26042370 ~ 26042613 (-)
G1274525 NA non-coding downstream 7986 26037807 ~ 26038072 (-)
G1274524 LOC107396935 non-coding downstream 8640 26036961 ~ 26037418 (-)
G1274509 NA non-coding downstream 27153 26018694 ~ 26018905 (-)
G1274548 NA non-coding upstream 17355 26065954 ~ 26066232 (-)
G1274561 NA non-coding upstream 41444 26090043 ~ 26090437 (-)
G1274568 NA non-coding upstream 66275 26114874 ~ 26115075 (-)
G1274595 NA non-coding upstream 122571 26171170 ~ 26177357 (-)
G1274596 NA non-coding upstream 124271 26172870 ~ 26179247 (-)
G1271421 NA other downstream 2317119 23713355 ~ 23728939 (-)
G1269265 NA other downstream 4242706 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 5085969 20958372 ~ 20960089 (-)
G1267452 NA other downstream 5755385 20290350 ~ 20290673 (-)
G1267414 NA other downstream 5777570 20267966 ~ 20268488 (-)
G1275015 NA other upstream 462926 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 506369 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 521679 26566351 ~ 26694581 (-)
LOC110489892 NA other upstream 685614 26733490 ~ 26743932 (-)
G1275434 LOC106590185 other upstream 788721 26837320 ~ 26841026 (-)

Expression


Co-expression Network