XLOC_003185 (dazap1)


Basic Information

Item Value
gene id XLOC_003185
gene name dazap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5880562 ~ 5925517 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006272
AACCGAAAGCGGAGTGTGACCTTCCCGGGCGGCGGAGACCGGCAGGAGACCGAGCGAGCGGACCCATGTCAGCACTCCCGTCCACAACCCTCGCCACGGAGATGAACAGCAACTTAGCTGGAGATGAAATCGGGAAGCTGTTTGTGGGTGGACTGGATTGGAGCACCACCCAGGAGACTTTACGAAACTACTTTTCTCAATACGGAGAGGTTGTGGACTGCGTCATCATGAAAGATAAAAGCACAAATCAGTCCAGGGGCTTTGGCTTTGTGAAGTTTAAAGACCCCAATTGCGTACGCACGGTCCTGGACACCAAACCTCATAACCTGGATGGAAGAAATATCGACCCAAAGCCTTGTACACCGAGAGGTATGCAGCCCGAGAAGACCCGGACAAAAGACGGCTGGaaaggaaGCAAAAGTGACAGTAATAAATCTAAGAAGATATTTGTGGGTGGAATACCTCATAATTGCGGTGAAGCTGAACTCAGGGATTACTTCAACCGATTTGGAGTGGTCACAGAGGTGGTAATGATCTATGACGCAGAGAAACAGAGGCCTCGAGGTTTTGGATTTATTACTTTCGAGGCCGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTTGAAGTGAAGAAGGCGGAGCCTAGGGACAGCAAAGCTCCCGCCCCTGGTCAGCTGGGAGCCAATCAGTGGGGGCCCCGAGCCATCATAAGCGCAGCCAATGGCTGGGCAGCACAACCGGCCCCGACCTGGCAGCAGAGCTACGGGCCTCAGGgtgTTTGGGTGTCTACAGGTCAACCGCTTGGGTATGGACCTCCTCTACCCGCTGGCCGTGGGGCACCCGCACAAGCTCCTTCTCCATTTAATGCATTTCTAGTTGCAGCGCCACCTACAGGAGGGTTCGGGGCGCCTCAGGGATACCCCCAACAGGGCTTTAGCACGCAACCTCAGTTTGGATATAGCTTTGGAACACCTCAAGGTGACCAGTTTGTAGCACAGGGAATGCCTCCCCCTCCCGCCACGCCGGGCGCAGGGCCTTTAGGGTTTGCTCCTGCAACGACTCCCTCTCAGGACCTGAGCAAAGCCGCCCCAGCACAGCCAGATTTCTCCTACAGCCAGTATGGTTATGGGCAGGACCTGAGTGCTTTTGGTCATAGCTTTGCAGACCCCAGCCAGCCTACTGCCTCATACGCCGCAGCCCCCTCCGCGCCCTCGTCAGGAGCTCCA
>TCONS_00006273
GTGTGACCTTCCCGGGCGGCGGAGACCGGCAGGAGACCGAGCGAGCGGACCCATGTCAGCACTCCCGTCCACAACCCTCGCCACGGAGATGAACAGCAACTTAGCTGGAGATGAAATCGGGAAGCTGTTTGTGGGTGGACTGGATTGGAGCACCACCCAGGAGACTTTACGAAACTACTTTTCTCAATACGGAGAGGTTGTGGACTGCGTCATCATGAAAGATAAAAGCACAAATCAGTCCAGGGGCTTTGGCTTTGTGAAGTTTAAAGACCCCAATTGCGTACGCACGGTCCTGGACACCAAACCTCATAACCTGGATGGAAGAAATATCGACCCAAAGCCTTGTACACCGAGAGGTATGCAGCCCGAGAAGACCCGGACAAAAGACGGCTGGaaaggaaGCAAAAGTGACAGTAATAAATCTAAGAAGATATTTGTGGGTGGAATACCTCATAATTGCGGTGAAGCTGAACTCAGGGATTACTTCAACCGATTTGGAGTGGTCACAGAGGTGGTAATGATCTATGACGCAGAGAAACAGAGGCCTCGAGGTTGAAGTGAAGAAGGCGGAGCCTAGGGACAGCAAAGCTCCCGCCCCTGGTCAGCTGGGAGCCAATCAGTGGGGGCCCCGAGCCATCATAAGCGCAGCCAATGGCTGGGCAGCACAACCGGCCCCGACCTGGCAGCAGAGCTACGGGCCTCAGGgtgTTTGGGTGTCTACAGGTCAACCGCTTGGGTATGGACCTCCTCTACCCGCTGGCCGTGGGGCACCCGCACAAGCTCCTTCTCCATTTAATGCATTTCTAGTTGCAGCGCCACCTACAGGAGGGTTCGGGGCGCCTCAGGGATACCCCCAACAGGGCTTTAGCACGCAACCTCAGTTTGGATATAGCTTTGGAACACCTCAAGGTGACCAGTTTGTAGCACAGGGAATGCCTCCCCCTCCCGCCACGCCGGGCGCAGGGCCTTTAGGGTTTGCTCCTGCAACGACTCCCTCTCAGGACCTGAGCAAAGCCGCCCCAGCACAGCCAGATTTCTCCTACAGCCAGTATGGTTATGGGCAGGACCTGAGTGCTTTTGGTCATAGCTTTGCAGACCCCAGCCAGCCTACTGCCTCATACGCCGCAGCCCCCTCCGCGCCCTCGTCAGGAGCTCCAGCGGCCGCCAGCAGCTTCGGACGGGGACAGAACCACAATGTACAGGGCTTCCACCCCTACCGGCGCTGAGCTGCTGTCCCACACCAACCCTCCCTCCCTCCCCAATGCAATAAACATCGTCAGGGATACAGACGTTTCCAGCACAAGCTGAACTGGATATTGGGATTGTCTTTCTGAAGATCGCAAAGAGCAAATAAAAAAAGGGGTTTTATTGtgtgtaaattgtaaacaggGGCTCTACTCCGACAATAGGAGACCACCGTACTCTTCTATATTTTGTAGTAGAACTGAACTACTGAAGTATTTAGCAATAGATTTGGATTGTCTGGTCAAACATCAGCACAGAACAGACGCACCAGACGTCAGCGACAGGGTCTCCCAATTattcagctttaattattatattagcggggaaatgtttttatttggaaTTTTGTGGATTTTGTTTACTCTACGAGCCTTTTACCGTTTTATTTAAGTTTGAAATAGAGTACAAATGTGTATTATACACCTAAACTGTgcaattttttaaagaattttgtaCTAATATATGTGCGCTTTTCTCGTTTTTTTATTTAAGGATGTAGAATTTCCTCAGGTGGCTGTTGGTGCACTTTGCACTTatgcaaaaaaagaaagtttaaaaaaacacacacaaaaatgagagtttatttgaaataaatgatttaaagaa
>TCONS_00006274
CTTCCCGGGCGGCGGAGACCGGCAGGAGACCGAGCGAGCGGACCCATGTCAGCACTCCCGTCCACAACCCTCGCCACGGAGATGAACAGCAACTTAGCTGGAGATGAAATCGGGAAGCTGTTTGTGGGTGGACTGGATTGGAGCACCACCCAGGAGACTTTACGAAACTACTTTTCTCAATACGGAGAGGTTGTGGACTGCGTCATCATGAAAGATAAAAGCACAAATCAGTCCAGGGGCTTTGGCTTTGTGAAGTTTAAAGACCCCAATTGCGTACGCACGGTCCTGGACACCAAACCTCATAACCTGGATGGAAGAAATATCGACCCAAAGCCTTGTACACCGAGAGGTATGCAGCCCGAGAAGACCCGGACAAAAGACGGCTGGaaaggaaGCAAAAGTGACAGTAATAAATCTAAGAAGATATTTGTGGGTGGAATACCTCATAATTGCGGTGAAGCTGAACTCAGGGATTACTTCAACCGATTTGGAGTGGTCACAGAGGTGGTAATGATCTATGACGCAGAGAAACAGAGGCCTCGAGGTTTTGGATTTATTACTTTCGAGGCCGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTTGAAGTGAAGAAGGCGGAGCCTAGGGACAGCAAAGCTCCCGCCCCTGGTCAGCTGGGAGCCAATCAGTGGGGGCCCCGAGCCATCATAAGCGCAGCCAATGGCTGGGCAGCACAACCGGCCCCGACCTGGCAGCAGAGCTACGGGCCTCAGGgtgTTTGGGTGTCTACAGGTCAACCGCTTGCAGGGTATGGACCTCCTCTACCCGCTGGCCGTGGGGCACCCGCACAAGCTCCTTCTCCATTTAATGCATTTCTAGTTGCAGCGCCACCTACAGGAGGGTTCGGGGCGCCTCAGGGATACCCCCAACAGGGCTTTAGCACGCAACCTCAGTTTGGATATAGCTTTGGAACACCTCAAGGTGACCAGTTTGTAGCACAGGGAATGCCTCCCCCTCCCGCCACGCCGGGCGCAGGGCCTTTAGGGTTTGCTCCTGCAACGACTCCCTCTCAGGACCTGAGCAAAGCCGCCCCAGCACAGCCAGATTTCTCCTACAGCCAGTATGGTTATGGGCAGGACCTGAGTGCTTTTGGTCATAGCTTTGCAGACCCCAGCCAGCCTACTGCCTCATACGCCGCAGCCCCCTCCGCGCCCTCGTCAGGAGCTCCA
>TCONS_00006275
ATGTCAGCACTCCCGTCCACAACCCTCGCCACGGAGATGAACAGCAACTTAGCTGGAGATGAAATCGGGAAGCTGTTTGTGGGTGGACTGGATTGGAGCACCACCCAGGAGACTTTACGAAACTACTTTTCTCAATACGGAGAGGTTGTGGACTGCGTCATCATGAAAGATAAAAGCACAAATCAGTCCAGGGGCTTTGGCTTTGTGAAGTTTAAAGACCCCAATTGCGTACGCACGGTCCTGGACACCAAACCTCATAACCTGGATGGAAGAAATATCGACCCAAAGCCTTGTACACCGAGAGGTATGCAGCCCGAGAAGACCCGGACAAAAGACGGCTGGaaaggaaGCAAAAGTGACAGTAATAAATCTAAGAAGATATTTGTGGGTGGAATACCTCATAATTGCGGTGAAGCTGAACTCAGGGATTACTTCAACCGATTTGGAGTGGTCACAGAGGTGGTAATGATCTATGACGCAGAGAAACAGAGGCCTCGAGGTTTTGGATTTATTACTTTCGAGGCCGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTTGAAGTGAAGAAGGCGGAGCCTAGGGACAGCAAAGCTCCCGCCCCTGGTCAGCTGGGAGCCAATCAGTGGGGGCCCCGAGCCATCATAAGCGCAGCCAATGGCTGGGCAGCACAACCGGCCCCGACCTGGCAGCAGAGCTACGGGCCTCAGGgtgTTTGGGTGTCTACAGGTCAACCGCTTGCAGGGTATGGACCTCCTCTACCCGCTGGCCGTGGGGCACCCGCACAAGCTCCTTCTCCATTTAATGCATTTCTAGTTGCAGCGCCACCTACAGGAGGGTTCGGGGCGCCTCAGGGATACCCCCAACAGGGCTTTAGCACGCAACCTCAGTTTGGATATAGCTTTGGAACACCTCAAGGTGACCAGTTTGTAGCACAGGGAATGCCTCCCCCTCCCGCCACGCCGGGCGCAGGGCCTTTAGGGTTTGCTCCTGCAACGACTCCCTCTCAGGACCTGAGCAAAGCCGCCCCAGCACAGCCAGATTTCTCCTACAGCCAGTATGGCTTGGGTAACTATCCTCAGGACCCCTCTGCCTACGGACCAACGCGTCCTTCTCACACTTATGTACAGGAAGAGCAGGGATATAGCGCAGGTTATGGGCAGGACCTGAGTGCTTTTGGTCATAGCTTTGCAGACCCCAGCCAGCCTACTGCCTCATACGCCGCAGCCCCCTCCGCGCCCTCGTCAGGAGCTCCAGCGGCCGCCAGCAGCTTCGGACGGGGACAGAACCACAATGTACAGGGCTTCCACCCCTACCGGCGCTGAGCTGCTGTCCCACACCAACCCTCCCTCCCTCCCCAATGCAATAAACATCGTCAGGGATACAGACGTTTCCAGCACAAGCTGAACTGGATATTGGGATTGTCTTTCTGAAGATCGCAAAGAGCAAATAAAAAAAGGGGTTTTATTGtgtgtaaattgtaaacaggGGCTCTACTCCGACAATAGGAGACCACCGTACTCTTCTATATTTTGTAGTAGAACTGAACTACTGAAGTATTTAGCAATAGATTTGGATTGTCTGGTCAAACATCAGCACAGAACAGACGCACCAGACGTCAGCGACAGGGTCTCCCAATTattcagctttaattattatattagcggggaaatgtttttatttggaaTTTTGTGGATTTTGTTTACTCTACGAGCCTTTTACCGTTTTATTTAAGTTTGAAATAGAGTACAAATGTGTATTATACACCTAAACTGTgcaattttttaaagaattttgtaCTAATATATGTGCGCTTTTCTCGTTTTTTTATTTAAGGATGTAGAATTTCCTCAGGTGGCTGTTGGTGCACTTTGCACTTatgcaaaaaaagaaagtttaaaaaaacacacacaaaaatgagagtttatttgaaataaatgatttaaagaaGCTATGTTGTGACAGTTTATTGAGTTCACGgtacaatggggtatatgcacacacttttaaaaaaaaaaatttttattgggTTTTtcacaacattaaaacaaaacatttaaacatcTGAACATCACATTACAACAAAACAACTCCAGGATAACATACTaaacttcaataaataaataaataaataaataaataacaacagtaagaaaaataaataaatataaaaaataaaaataaatgaatacataaaaataaaaaaattctaaataaataaaaataaaaagagtcaATATAGAGTATATTTCTTTGCACACAACATCAAAAGTAGTTCACTGTTTGACcttgatgttttatttaacttctattctttttttattttttttattgcaataataacaatacattacaACAAATACCGATACAAAACTGAAAGAAGTATAGTACAATCAATAGAAATATTACTTTTTGAAAAAAGTGGATTGTAACAAATTtagaacaaattaataaatgtaaaagaaattaaagggaacaagagagagaaaagaagaagaaaaataaataattaagggcACATAAAGATAAAttattgcagaatattaaataaagcacatattttaGAAGTTTTAATAGCTTTCTTATTGTGAGAGTCtatgatgtttttttaaataaagagctaGTTCTcgtttaaaaaatagaaaattaggCTTACCATGagtatatttgcatttgtgtataaaaaactttccaataaataaaatgaggtttATGCAAAAAGTTGCATTAAGGAATTCTTTTCCTTTAATATATAGCCCCAAAATAACATGACGATAGCTTAAAGAAAAATCACCACAAACCTTTTGGACAATTAACTTCTATTCTGCTGTCAGGTCCACTTGGTTGCAAAAGTGTAGAAAGGGGTTCCAGATGCAATAAAAGTCTTTTAACTTCCGTTTGATAATGTACGTTAGTTTTTCCAGAGCAAGATTACAGGACATTTCCTTGATCCATTGATTAGAAGAGGGCCTTTGAGTCTCTTTCCATTTTAATGCAATAACACGCTTGGCCTGCAGACATGGACACACTTTTAACTTCAgccagccagccccagggcttcctgTTATCGTCATCCCATTCAAAATCGCTGCGTTTAAGATGCGATTTCTTTAAACGACAGCAAtcatcactgcctggctgagatacgatatgaagtgggcctcagaccaaacaagaagcactgcattaaactatATTTTACCACACCATGCCTTTAAAATATGGACATCTATTTTACCCCAGAGTTTTTGTGCTCGTCTTTCTtctctttttacgctttaaccACCAAATGAATGCTTTAgtctatttaatttttattacatcACAACATCGATGTAGTAAAgggaaccttatgaaactgaaaatagaccAGCTTTCGCCGGAAGTTTGTTGTTGGCTTAAAAACGTTTGCTGTGCATAAAGTTCATTGctttcacatttacacaaatGAATCTATTGACTTTTTTAAGAGCCGGAATATATAAAATCTAAGAATTGTTTAGTTGTGAGTGGGAAAAGGTAGGCAGTGTCCATGTTTAATAATGCTTGTAACAGTTGAACATTAGGGGCAGGGTACTTATgtctataacatttttattttaattgttgtcaatgtctatttttttttttaggttttaaaatAAGAGATTTCTCAAGGATTTTTGTCTTCACCAAGTGGTGGTAAAGTCTTAAAAGTGCAAATGCTCTATGTTGCTTCAATAtggg
>TCONS_00006276
TTTAAAGACCCCAATTGCGTACGCACGGTCCTGGACACCAAACCTCATAACCTGGATGGAAGAAATATCGACCCAAAGCCTTGTACACCGAGAGGTATGCAGCCCGAGAAGACCCGGACAAAAGACGGCTGGaaaggaaGCAAAAGTGACAGTAATAAATCTAAGAAGATATTTGTGGGTGGAATACCTCATAATTGCGGTGAAGCTGAACTCAGGGATTACTTCAACCGATTTGGAGTGGTCACAGAGGTGGTAATGATCTATGACGCAGAGAAACAGAGGCCTCGAGGTAAACCACACATTCATATTTGCTCCCATTCAGTCTCTCTCACCTCATCCGCAAGACAAACTATTCCAACCCAAAGAGAAGCGAACATCACGCA

Function

symbol description
dazap1 Predicted to enable mRNA 3'-UTR binding activity; poly(G) binding activity; and poly(U) RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome and spermatogenesis. Is expressed in Purkinje cell. Orthologous to human DAZAP1 (DAZ associated protein 1).

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0048026 positive regulation of mRNA splicing, via spliceosome biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008266 poly(U) RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function
GO:0034046 poly(G) binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070212-1 Predicted to enable mRNA 3'-UTR binding activity; poly(G) binding activity; and poly(U) RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome and spermatogenesis. Is expressed in Purkinje cell. Orthologous to human DAZAP1 (DAZ associated protein 1).

Ensembl:

ensembl_id ENSDARG00000070846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006272 False 1253 mRNA 0.55 12 5880562 5923047
TCONS_00006273 False 1851 nonsense_mediated_decay 0.50 11 5880575 5923741
TCONS_00006274 False 1236 mRNA 0.55 12 5880582 5923047
TCONS_00006275 False 3751 mRNA 0.40 13 5880627 5925517
TCONS_00006276 True 383 lncRNA 0.46 4 5887686 5889156

Neighbor

gene id symbol gene type direction distance location
XLOC_003184 ndufs7 coding upstream 27847 5842632 ~ 5852715 (+)
XLOC_003183 ctdspl3 coding upstream 44276 5817202 ~ 5836286 (+)
XLOC_003182 arid3a coding upstream 69604 5681762 ~ 5810958 (+)
XLOC_003181 r3hdm4 coding upstream 205639 5666325 ~ 5674923 (+)
XLOC_003179 APBA3 coding upstream 220881 5565082 ~ 5659681 (+)
XLOC_003186 rps15 coding downstream 1333 5926850 ~ 5931622 (+)
XLOC_003187 NA coding downstream 29748 5955265 ~ 5966389 (+)
XLOC_003188 gtpbp3 coding downstream 84467 6009984 ~ 6037759 (+)
XLOC_003189 CT573239.2 coding downstream 144358 6069875 ~ 6074783 (+)
XLOC_003190 ushbp1 coding downstream 151129 6076646 ~ 6101104 (+)
XLOC_003250 BX324177.11 misc downstream 5420286 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5447369 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5460845 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5492516 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5503876 11429393 ~ 11429689 (+)
XLOC_003180 NA non-coding upstream 277841 5602340 ~ 5602721 (+)
XLOC_003178 CU855733.1 non-coding upstream 348986 5531443 ~ 5531576 (+)
XLOC_003176 CR559931.1 non-coding upstream 398678 5481753 ~ 5481884 (+)
XLOC_003170 NA non-coding upstream 2097437 3771266 ~ 3783125 (+)
XLOC_003169 NA non-coding upstream 2144759 3615750 ~ 3735803 (+)
XLOC_003195 BX248501.1 non-coding downstream 280452 6205969 ~ 6224120 (+)
XLOC_003198 AL840638.1 non-coding downstream 397481 6322998 ~ 6324302 (+)
XLOC_003199 AL840638.2 non-coding downstream 402461 6327978 ~ 6328093 (+)

Expression


Co-expression Network