XLOC_031851


Basic Information

Item Value
gene id XLOC_031851
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 9163007 ~ 9173106 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062380
AATGTTGTCAAACTTGTCCATACAAAGTGCCACGAGAGCGACATGAACAAAGAAAATCGATAAGTTTTTGAACATCctcaacaaaacaaacacaaaatagaCATTCAGCAATGTGTCTGTCAGGGGATGACGTGCAGAAAAACGCGGAAACAGTGCACATTTTTCGGTTTTAGCGTCTGGCGTAGGCAAGGATGGTTAGGCTACTGCGAAGTGTCAATAAGAGCATTCTaggtttttgttaataaatcacaAAACGCAATAAAATGGAGGATGAAGATTGTTATGAGGATTGGATGTCCAAGATGCCCTCTCATATGTGGGATATCCCTCTATGGAATCTCGCTATACCGGgAAGTCATGACAGCATGACTTACTGTTTAGATAAGCAATCCTCAGTATCGAACTCCACGCCGAGGGTGGTGCAAGTGTTGGACAAGTATTTTCCTTGTATTGTTCGGCCCTGTATAATGAAATGGGCAACAACAcaggttgtttgtttgtttgtttatcaatATTATGTGGTAATGTTAACATGACCACAGCATTAATTGCATCTATATGGTGTCATTCTGCCTCATATTGTATTACACATATAAAGTCATGCAGATTTAGAGTAACTATAGCCGATTTTGTATTAGACTTGTCTTCTCATGGGAAATTTTTAAGTTTGGCCTAATACGTAAGGATAAAAAGATatcttatataattaataatttaatgttattattaaaactttatattcataaatgtatttttttattccccCAAGACTAGTGTTTAAAGAAGAATTTGTGATGCATTTAAAGACATTAGAAAAGgcaaaaagaaagatatttttaTTCATCATTAGATGACTTTGGTTTACTTTAACTCCCATGATACTTAAGtttctttagcatttatttattttttgttaatttttgttattttatttatttatttataaatgttgtaTTATTAATGAGGATGGAAAGATAGTGAATGTATGCAATCTGATTGTTATcttagtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaattctaAAAAGTATTAATGCCTTTCTATTACGGTTCAagcattgttaataaaataaaataaaa
>TCONS_00062381
ATACAAAGTGCCACGAGAGCGACATGAACAAAGAAAATCGATAAGTTTTTGAACATCctcaacaaaacaaacacaaaatagaCATTCAGCAATGTGTCTGTCAGGGGATGACGTGCAGAAAAACGCGGAAACAGTGCACATTTTTCGGTTTTAGCGTCTGGCGTAGGCAAGGATGGTTAGGCTACTGCGAAGTGTCAATAAGAGCATTCTaggtttttgttaataaatcacaAAACGCAATAAAATGGAGGATGAAGATTGTTATGAGGATTGGATGTCCAAGATGCCCTCTCATATGTGGGATATCCCTCTATGGAATCTCGCTATACCGGgAAGTCATGACAGCATGACTTACTGTTTAGATAAGCAATCCTCAGTATCGAACTCCACGCCGAGGGTGGTGCAAGTGTTGGACAAGTATTTTCCTTGTATTGTTCGGCCCTGTATAATGAAATGGGCAACAACAcagGAGGGCGCCATCTCTAACCAACTGGATTTGGGCATTCGGTTCCTGGATCTAAGAATAGCACACAAAATAAAAGACCCTGATGAAGTTTTCTACTTTGCACACGGAGTCTACTCTCTTCTGACCGTTAAAgaaGCACTGACAGAAGTTGCACGTTGGTTAGATCAACACATTAAGGAAGTGGTCATCATTGCACTTTCTAATTTTGAAGGCATGAACCTGGACCAGCACAAAGACCTCATTCAGTTTCTCATTGccacatttaacaaaaaaatctgtCCCAAATCTGTCACCCCTTCACTACAGGAGTGCTGGAATCACAGTTATCAGGTTATTCTGTCATATGATGATGAATCTTCAACTGGATATGTAGAACTGTGGCCTCAGTGTCCATACTGGTGGGCGAACAAGTCAGATCCAAACCTAGTTATATCCTACCTGGAGGACCAGAAAAATGAAGGAAGACCAGGTCAGTTTTTTGCTGCTGGCCTGAACCTAACTGAGGATGCTCGGTATGTACTTTGTCATCCCTGCCAATCATTGCAAAGCATGACCCGACGTTCCTACAGTCTGCTTATGAAGTGGGTGGAACAACAGCGGCCAGGCTCAGGCCAAGCATGCCTTAACATCATCTGTGCAGATTTTGTTGGGATTTTCGGCAGTGAATTCACCCAGCTGGTTATCGGACTCAATCAAATAGAGGCTTGACCCATAAATACACAGCAAATGACGTTGTAGTGTGGTGAAGAGTTGCAAAAAAgcctataaatataaaatgttcttCTGAAATAAGCATTTTTTCACCTTGTGTAGGTCCAGTAACTTAAATTTATGACAAAGAACAGCATATTGtcattacttttaaataaattatttaaataactgAACATTAACATTGGAGgctaagaaacatgctaattttagaagaaaatggcAGATAACATTTAGGTTTTACTCTTCAAATGTGTTACATAAAAATGTAGCgtctttattacaatataattacacattttttgatatttagaatgTTTACTTCTCAGTGTTTACATATCAATCACCTATATTTATTTTACGACAGTCCCTAAACTATCATGGCGGGGAAAATTGTACAATGCTGCCATCTATTGGTAATCGATATTTAGGTTTCATTTTTGTTTCAGACTTTAACAGTTAAATAGCTCAAAAATAATGTTACTTTAAACCTCACTGTTACTGGAAATGTCGAATATCTAGTTTTCTACTTTTCTTTACTAAAATAGAAATGGCGGATTCACATAATCAAAGACTAAGTGGCTGAGTAATGAGTAGATAGCATTACCTGTACAATGAGTCACGCTAAATTTTAGTAGCATCTAATGTCCTGTCATGACTTTGTATGTTGTTGACACTGTTGGGCTTTTTCGGTCCATGTCAACACATGTATCTGCGGGGGTCTAATTTTAGACGGCCCCTGTGGGTGCACTCTATAAGGTGCTTAACATTTATAGTATCTACTTAAATGATAATCCCGTTCACTGATGCCTTTCACActcctgtttgtatgtgtttatgtacAGTAGGGTGTATATGATGTAAATAAACAGCTATTTTTttgtaa
>TCONS_00062382
ACTGGATTTGGGCATTCGGTTCCTGGATCTAAGAATAGCACACAAAATAAAAGACCCTGATGAAGTTTTCTACTTTGCACACGGAGTCTACTCTCTTCTGACCGTTAAAgaaGCACTGACAGAAGTTGCACGTTGGTTAGATCAACACATTAAGGAAGTGGTCATCATTGCACTTTCTAATTTTGAAGGCATGAACCTGGACCAGCACAAAGACCTCATTCAGTTTCTCATTGccacatttaacaaaaaaatctgtCCCAAATCTGTAAGTAAcccgtttttaaaacatttgcaggtgataatttcttttttattgatCCTGCAAGAAGTTTTTaggacattttaataaataattcacccaaaaattacccCATCATTCACTCAAGCCATGCTCAATGTATGTGGGTGTTTTTTCCTTTCAGACAAACACAGTGGGagtggttttaaatttttttcttatataGTGTCAAGTGTTGGGCAAGCTCCTTAAAagtgtagtgagctaagctattagctactctacttaaaatgtagcttaactacactaaaagctaccatCTGGGGAATGTAGCacgctaagctaaaagctacatgccAAAAGTAgtttagctacatctaagctatttttacaattttcattatttaaattgaagcaacttaaatccaagtatcttagtgatcaataaaactgtcaatgaaacatatgaggcagaactGTTCAGTTCTATTGAGAatgggcaaaaataaataaattatctgGACCTGGTTGCCCTAATGAGCTGACTCTCTCTTGGTTGCCCGTTGATGGCATA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0006376 mRNA splice site selection biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0018205 peptidyl-lysine modification biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0051276 chromosome organization biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0055123 digestive system development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0010842 retina layer formation biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0031510 SUMO activating enzyme complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0019948 SUMO activating enzyme activity molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050417-162 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. Orthologous to human PLCXD1 (phosphatidylinositol specific phospholipase C X domain containing 1).

Ensembl:

ensembl_id ENSDARG00000103253

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062380 False 1117 lncRNA 0.33 2 9163007 9164205
TCONS_00062381 False 2063 mRNA 0.39 6 9163026 9173106
TCONS_00062382 True 812 lncRNA 0.36 2 9164246 9165146

Neighbor

gene id symbol gene type direction distance location
XLOC_031850 zgc:64065 coding upstream 1614 9155252 ~ 9161393 (+)
XLOC_031849 zgc:64065 coding upstream 12631 9142731 ~ 9150376 (+)
XLOC_031848 rgn coding upstream 23021 9130989 ~ 9139986 (+)
XLOC_031847 vps16 coding upstream 32164 9107063 ~ 9130843 (+)
XLOC_031845 CR954285.2 coding upstream 165011 8705149 ~ 8997996 (+)
XLOC_031852 si:ch211-207l14.1 coding downstream 2780 9175886 ~ 9187959 (+)
XLOC_031853 sft2d2b coding downstream 18875 9191981 ~ 9201566 (+)
XLOC_031854 tbx19 coding downstream 30993 9204099 ~ 9220775 (+)
XLOC_031855 pimr70 coding downstream 68015 9241121 ~ 9242449 (+)
XLOC_031856 kalrnb coding downstream 116696 9289802 ~ 9455966 (+)
XLOC_031846 CR954285.1 non-coding upstream 391411 8771476 ~ 8771596 (+)
XLOC_031844 CU571254.1 non-coding upstream 471014 8691408 ~ 8691993 (+)
XLOC_031840 NA non-coding upstream 709365 8450311 ~ 8453642 (+)
XLOC_031839 NA non-coding upstream 816066 8339271 ~ 8346941 (+)
XLOC_031857 NA non-coding downstream 364564 9537670 ~ 9539292 (+)
XLOC_031858 NA non-coding downstream 478145 9651251 ~ 9666598 (+)
XLOC_031867 NA non-coding downstream 839155 10012261 ~ 10013022 (+)
XLOC_031868 NA non-coding downstream 851544 10024650 ~ 10036969 (+)
XLOC_031872 NA non-coding downstream 1002751 10175857 ~ 10184750 (+)

Expression


Co-expression Network