G1275243


Basic Information

Item Value
gene id G1275243
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26911196 ~ 26911423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1456547
GACTAAGAATAAGGCTAAGAATCTGACTAATACTAAGAATAAGGACAGAATAAATAGCCTTTCGTAGTCAATAGTCGTAACTGACTTGTAGAACAGATTCAAGAGGAATGACTGTAGGTCtaacactgttctgtctgtcttttcAGCTCCTTTAACAtcctctctttttcttctctctctttcactttctccccAACACTCCTCCATACACAGAGATTTCATCTCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1456547 True 228 lncRNA 0.38 1 26911196 26911423

Neighbor

gene id symbol gene type direction distance location
topbp1 LOC106590185 coding upstream 62164 26811022 ~ 26849032 (+)
LOC110489893 LOC106590186 coding upstream 100617 26761940 ~ 26810579 (+)
LOC110489891 LOC106590187 coding upstream 151995 26756775 ~ 26759201 (+)
LOC110489887 LOC106590191 coding upstream 346540 26544695 ~ 26564656 (+)
LOC110489881 LOC106590196 coding upstream 862552 25935177 ~ 26048644 (+)
LOC110489897 LOC100380682 coding downstream 12471 26923894 ~ 26928782 (+)
kif9 kif9 coding downstream 49326 26960749 ~ 26974049 (+)
trnaa-ugc-66 NA coding downstream 182066 27093489 ~ 27093563 (+)
LOC110489907 LOC106590173 coding downstream 421063 27332486 ~ 27350841 (+)
chpf2 LOC106590171 coding downstream 450380 27361803 ~ 27369326 (+)
G1275160 NA non-coding upstream 180134 26730598 ~ 26731062 (+)
G1275154 NA non-coding upstream 185044 26725805 ~ 26726152 (+)
G1275147 NA non-coding upstream 195370 26715481 ~ 26715826 (+)
G1274926 gli3 non-coding upstream 284699 26601652 ~ 26626497 (+)
G1274907 gli3 non-coding upstream 342464 26566376 ~ 26568732 (+)
G1275251 NA non-coding downstream 11729 26923152 ~ 26923447 (+)
G1275257 NA non-coding downstream 23614 26935037 ~ 26935277 (+)
G1275272 NA non-coding downstream 64256 26975679 ~ 26982457 (+)
G1275563 LOC106590178 non-coding downstream 168296 27079719 ~ 27090092 (+)
G1275573 NA non-coding downstream 191414 27102837 ~ 27103117 (+)
G1274830 NA other upstream 468809 26440011 ~ 26442387 (+)
G1274765 NA other upstream 546050 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 1936483 24968304 ~ 24976522 (+)
G1272672 LOC106590208 other upstream 1948155 24959932 ~ 25027501 (+)
LOC110489866 tmem241 other upstream 2034480 24869606 ~ 24876724 (+)
G1275572 NA other downstream 189886 27101309 ~ 27102027 (+)
G1276288 NA other downstream 942195 27853618 ~ 27854013 (+)
G1276733 NA other downstream 1278763 28190186 ~ 28256406 (+)
G1277159 NA other downstream 1662893 28574316 ~ 28624218 (+)

Expression


Co-expression Network