G1275272


Basic Information

Item Value
gene id G1275272
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26975679 ~ 26982457 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1456578
TGAAAAGTAAATTTTATTGTTCCTGAACGACAAAATAGACTTCTTTGGTTGTACAAATTCACTAGTTACAGTCTTGGATGAGCTCTAACCCTTGACCCCAGCACTACTGCCCTTCTCCTCCGACCCATTTGGAAAAAACAACAGCCCCAAGAGAATTCAAGAAGAGATAACCAAAAAAAGATCAAACAGTTCTGCCTTAAATGTAGTGAATCCCATTGTCTGGAAAGTTTTACCTACTAAGAAAATCAGCCATTTGCAAATGTTATCAACCTAACTGAATTTCAGTCAGGGAGAGCAACACAGAAAGCTATGATTAAAACGCGCTTCTCCAACAATGCTGCAATCAGATAACATCCACTGACAGCAGCAGGTAAAGCAGAGAAAAGAGATTGAGAATGATGGTCGAATGAGATTGAGAGGGATTAACAAAATGTTTTCTGCCCCTACAGGTTCTCACAGTAAAGCCAATATAcatgcagagagagcgagagtgagagaaaaaaagagcaaaggcgagagagcaagagtgagagCTCCCCAGTCCAGACACTTGCTTGGTCGTGGCTTCGTAGACTGGCTCAGTTCCGACCGTTAAGTTTTGCTTTCCTTTTAGTATTTTGTACATTATTCACACAATGATAAAGGATTTTCAGTGGCGTCAGATTTAAATTAACCAAAGACAGAtacaaaaataagcaaacacctGCTACCTTCACCTGCCAAATTTGAAAGATATGAGTGAGATTCACATTGACAAATTATGTCCCCAAAAAGGGCTGGGAAAGTACCGTATATAATGTCAATGGAGATGAAGCTGATACTGAGTTTATGATCACAAATTGACAGGCATTTTGAATTAGGACTAGAGGCTCAGATTTCTGTCAATATATGCATGTCTGCTGGTCTCTCCAGTGTCGTTACATTCTCTAGAATGGGATTCTGACAGACTCATAAACCTGGTCTAGGACAGCTAGAGCTGGTCCACTGATATCACCACTGATATCACAAACTTATGTGACAGCCCGTACATGTACCATGCTACATTAGGGACGTTTCATCAGTCAGAACCTGGTTTAGGCCGGTGCagcaacaaagtgaaaacaaatgTATTCATtggccccccccaaaaaaagaagcGGGTTGAGGATGATTAAAAAAGGCAGTTGCCTCATAAGATCATTATGCTTTGATGTCATTAGGATAAATAAAATGCTATGCACCGCGCCATTGTTTGGTTGTACAGGGATTAACAACAATGTATTACAGGGGAGGCTTCAGATTAGAGTAATAAAACGCAagaaaaataaattatttaaaaagATTCAAATGTTTTCTAAGCAGTGCGGCAGTGCAATCGAGATATGTACGTAGTGTTTAAAATGCATTGCACACGTGGCAGTGAAGGTAGCAGTATGTTCCCACCTCCTACAATATATACACTCCCCCTCCCCAAAGCCCGCTAAAAAccctgacatttcacaatctatTCACTGAAAACCTCCAAAATAGCATCTGAAAAGTTAGTATTACAGCtacacatttcatttttttttctccattgctCTTCCAGAAAACATTTTTCTTTTAAAACGGCAAAAAATCAGAGGcgcaaaaataaaaacataagtCGCCTGTTAATATAATTCAGCTTCTAAAACGCAAACTGAAGAAAAATAACCCAAATGAAAAGGAAAACGTTGAAACGAAATGCTAGCCTCACAGGCCCTCCTCCTCCCTGGTATCGGGAACGTTGGGCCTTGTGTTGATGCCAACTCATCCTCAGACTGTCAAGGCAAGACTGGCACGCAGGACATGACATGGTATGTGTGTTTGTTGATTATCAGCATCATAGTCTCTGCAGTGGTTACATGGGACGCATCTCCCAAacttgtgagtgtgtgtagtgtatagtgactCAGTGCCACCTGTGTGTGTCACACCCGAGTCTCCTGCGGTAGGTGTGTGAGTTGTTATGTGGGCACGGCGGTCTCCAGGCTGCGGCGGCCCTGCCTCAGCTTGCGTTTGTTTCTGTAGAGGGCCATCTCCTCCAGCGTTGAGGTGGCAGTGGGGACCTCAGCGGGC
>TU1456579
TGAAAAGTAAATTTTATTGTTCCTGAACGACAAAATAGACTTCTTTGGTTGTACAAATTCACTAGTTACAGTCTTGGATGAGCTCTAACCCTTGACCCCAGCACTACTGCCCTTCTCCTCCGACCCATTTGGAAAAAACAACAGCCCCAAGAGAATTCAAGAAGAGATAACCAAAAAAAGATCAAACAGTTCTGCCTTAAATGTAGTGAATCCCATTGTCTGGAAAGTTTTACCTACTAAGAAAATCAGCCATTTGCAAATGTTATCAACCTAACTGAATTTCAGTCAGGGAGAGCAACACAGAAAGCTATGATTAAAACGCGCTTCTCCAACAATGCTGCAATCAGATAACATCCACTGACAGCAGCAGGTAAAGCAGAGAAAAGAGATTGAGAATGATGGTCGAATGAGATTGAGAGGGATTAACAAAATGTTTTCTGCCCCTACAGGTTCTCACAGTAAAGCCAATATAcatgcagagagagcgagaagaaaagagagatgagtgagggagagcgagcgagaggataCTAAGGCACGGTGCTCTAATGGAGTGGCGAGGACAATCAGACAACACCAGCTGTTGGGTGCTCCTTGTCCTGGCCTGCTGTGGCTCACTCAACACAGAAATGCTCGTTAATAAGACTACAGTATCAAGACTAGCATGGCAGACAGCATCCAGGAGAAGGACTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1456578 False 2082 lncRNA 0.42 2 26975679 26977787
TU1456579 True 694 lncRNA 0.43 2 26975679 26982457

Neighbor

gene id symbol gene type direction distance location
kif9 kif9 coding upstream 1630 26960749 ~ 26974049 (+)
LOC110489897 LOC100380682 coding upstream 46897 26923894 ~ 26928782 (+)
LOC110489896 LOC106590184 coding upstream 57031 26860119 ~ 26918648 (+)
topbp1 LOC106590185 coding upstream 126647 26811022 ~ 26849032 (+)
LOC110489893 LOC106590186 coding upstream 165100 26761940 ~ 26810579 (+)
trnaa-ugc-66 NA coding downstream 111032 27093489 ~ 27093563 (+)
LOC110489907 LOC106590173 coding downstream 350029 27332486 ~ 27350841 (+)
chpf2 LOC106590171 coding downstream 379346 27361803 ~ 27369326 (+)
asap1b LOC106590164 coding downstream 469823 27452280 ~ 27519315 (+)
fam49bb LOC106590167 coding downstream 541668 27524125 ~ 27563497 (+)
G1275257 NA non-coding upstream 40402 26935037 ~ 26935277 (+)
G1275251 NA non-coding upstream 52232 26923152 ~ 26923447 (+)
G1275243 NA non-coding upstream 64256 26911196 ~ 26911423 (+)
G1275160 NA non-coding upstream 244617 26730598 ~ 26731062 (+)
G1275154 NA non-coding upstream 249527 26725805 ~ 26726152 (+)
G1275563 LOC106590178 non-coding downstream 97262 27079719 ~ 27090092 (+)
G1275573 NA non-coding downstream 120380 27102837 ~ 27103117 (+)
G1275576 NA non-coding downstream 122826 27105283 ~ 27105492 (+)
G1275637 NA non-coding downstream 207377 27189834 ~ 27195235 (+)
G1275642 NA non-coding downstream 221530 27203987 ~ 27263740 (+)
G1274830 NA other upstream 533292 26440011 ~ 26442387 (+)
G1274765 NA other upstream 610533 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 2000966 24968304 ~ 24976522 (+)
G1272672 LOC106590208 other upstream 2012638 24959932 ~ 25027501 (+)
G1275572 NA other downstream 118852 27101309 ~ 27102027 (+)
G1276288 NA other downstream 871161 27853618 ~ 27854013 (+)
G1276733 NA other downstream 1207729 28190186 ~ 28256406 (+)
G1277159 NA other downstream 1591859 28574316 ~ 28624218 (+)
G1277279 NA other downstream 1832909 28815366 ~ 28815810 (+)

Expression

G1275272 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 8.
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G1275272 Expression in each Bioproject

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G1275272 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G68955 NA non-coding NC_047598.1 CM018544.1 22383094 ~ 22387745 (+)