G1275563 (LOC106590178)


Basic Information

Item Value
gene id G1275563
gene name LOC106590178
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 27079719 ~ 27090092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1456913
ATGGGAACCAATAGCTCTAAAACGATTTTTAAAGAGTCCTGACAACTTAAAAATGGGGGTAACCTAATGACTTCTCAATTTGATAACAAAAAAAAACTgcaaataatacaaaataaatcaaGTCTTCACAGTAGGTGACAAAACAAAATCCATGAGGTGCAAATATTATTTTCTTAACCAATCCCTCAAAAGAGACCattaataatattaatatcaacatcaataaaaaaaattacaatttaaAAAGAGGCCCAAATCTCTAGCAGCAGTGATAGTGGCTGAAGTGAGTTTGAGCAACGGGTATGGGATGGGTGTTGGGCGACCATTTCAGACAGTTTATGCGGAGAGGTCGCTACTGTTAAAGCGCTCTTGGTCGTAGACCTCCGCGATGACCTTGCGACCCCCAAACCAGCGGTCGTTGAGTGCCTGGATGGCCTTGTTCATCTCCGAGACCATGGAGAACTCCACAAAGATCTTGACGATGATCTCggcatcctcctcctccccctgcttCTCCTGGTAGATGATGACCCGGTTGACGGCACCAAACTTGCCGCACTCCTCTGTCACCTCGCCCTCTAGGTCGTCATCGATGTCCTCTGGCCCCACCATGTTCCGTAACACCATCACCGTAGACTCTGATTTCCTCAGCAGTTTCTGCATGACCATGTGCCTGGCGCTGCTTCCGGAAATGCTCATGTGTTCTTGGTCGCTCAACATCTCCTGGCCTGTCCCATCCTGCagcatctctttctcctcctgctTCTTCTTCTGAAGCTCTTGTAGAGAGGGGTTGATTTGGGCCGGGTTGGTGATCACAGGCGGTGAGGCCAGCACAGGGTTGACCAGGCCCACCTGGGGCAGCACTGGCAGGTTAGGACGCACTGGTGTCACACCTACAGGGACATTCACACACATCAGCCATACATAAATACATCTTCATTGATATGGTTTCTCTGAGAGAACATTGCCATTCATAGGAGTCAAAACCTGTTGCAATTTCATTGTTTCTCTAATTGGTCATGTGGCATGTGAACCAACTGTAGTCAAGCTTTTTTTTTAACACATTCTCAAATGAGCAGGATCAGATGGAAAAACTACAAAAACTGGCTGACCAGATAATCCCGCTCAACACAGTAGCATTGAGTAGATAAGAGACACACTTGAAATAATTTAAAACGATCCTCTAACCCTCTAAAAAGATTCAAAACAGTGCACAGGTCAGTGGACAATACTCTGTACTCACACATGTCTCGATACACACCTGTGATCATTCCGGGGGCCTGGGCAGCCATGACTGCCTGAGGGATGCCCATGGAGCCCATCGGACCCATTTGTCCCATTTGTCCCATCTGACTCATTTGGCCCATCTGGTTCGCCCCGGCCATCGCCCCCAAGATGGACGCCCCGGTCACAGCCTCCTTGAGAGAGGGGCGGGAcgcattagcaggaaaacacagTGAGGTTGCACAGTCAGACTTTATACAGCATGTATAGTGCTCTACTCTGCATTAGGGTTGGGGGATGTCCACCTTTGTCCTATCGTGATTAAGTACCCATAAAACATTGCGATATTCAATGATACTGACCCCCTACTGGCCAACCACCCAAAAGACTTAACaaaaatacaatttttaaaaagaCCGGTAAAAAAGGACCACTAGCGCAAGCTCGCAGGACAGTCAGAGGCAAAGTCATTAATATTCTAGAGTTAAGTCAGGTGACTGGTTGAGCCTTCTTGGGTGAGTGACGTCACAAGTCTATCTTGTTCACCAGCATGAGCACTAAGCACTGAACAACTTGGGAAACCCAGCTTCAGCttaattaagaaatatattaaA

Function

NR:

description
poly(U)-binding-splicing factor PUF60-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1456913 True 1841 lncRNA 0.46 2 27079719 27090092

Neighbor

gene id symbol gene type direction distance location
kif9 kif9 coding upstream 105670 26960749 ~ 26974049 (+)
LOC110489897 LOC100380682 coding upstream 150937 26923894 ~ 26928782 (+)
LOC110489896 LOC106590184 coding upstream 161071 26860119 ~ 26918648 (+)
topbp1 LOC106590185 coding upstream 230687 26811022 ~ 26849032 (+)
LOC110489893 LOC106590186 coding upstream 269140 26761940 ~ 26810579 (+)
trnaa-ugc-66 NA coding downstream 3397 27093489 ~ 27093563 (+)
LOC110489907 LOC106590173 coding downstream 242394 27332486 ~ 27350841 (+)
chpf2 LOC106590171 coding downstream 271711 27361803 ~ 27369326 (+)
asap1b LOC106590164 coding downstream 362188 27452280 ~ 27519315 (+)
fam49bb LOC106590167 coding downstream 434033 27524125 ~ 27563497 (+)
G1275272 NA non-coding upstream 97262 26975679 ~ 26982457 (+)
G1275257 NA non-coding upstream 144442 26935037 ~ 26935277 (+)
G1275251 NA non-coding upstream 156272 26923152 ~ 26923447 (+)
G1275243 NA non-coding upstream 168296 26911196 ~ 26911423 (+)
G1275160 NA non-coding upstream 348657 26730598 ~ 26731062 (+)
G1275573 NA non-coding downstream 12745 27102837 ~ 27103117 (+)
G1275576 NA non-coding downstream 15191 27105283 ~ 27105492 (+)
G1275637 NA non-coding downstream 99742 27189834 ~ 27195235 (+)
G1275642 NA non-coding downstream 113895 27203987 ~ 27263740 (+)
G1275629 NA non-coding downstream 116724 27206816 ~ 27231469 (+)
G1274830 NA other upstream 637332 26440011 ~ 26442387 (+)
G1274765 NA other upstream 714573 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 2105006 24968304 ~ 24976522 (+)
G1272672 LOC106590208 other upstream 2116678 24959932 ~ 25027501 (+)
G1275572 NA other downstream 11217 27101309 ~ 27102027 (+)
G1276288 NA other downstream 763526 27853618 ~ 27854013 (+)
G1276733 NA other downstream 1100094 28190186 ~ 28256406 (+)
G1277159 NA other downstream 1484224 28574316 ~ 28624218 (+)
G1277279 NA other downstream 1725274 28815366 ~ 28815810 (+)

Expression


Co-expression Network