XLOC_031857


Basic Information

Item Value
gene id XLOC_031857
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 9537670 ~ 9539292 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064813
GCATCACATGGCATCACAAAagaaagacattaaaaaaagtgggCCTTCCCCTGTGTAAATGACTGCAGGCCAAATCTAAACTCAAGGGGGCCTTGAATAGAGAACTGCTAATACAGTAGGTCTATTGTGTGAAAGGGTTTTCAATGTCCTTTGCTGCCAGATATCATGATCCGGAAGGACCGCAAGGAAATCTTTCCAAAGTAACAAACTCAACGCAATGAATGGAGGTAGACTTTCTTAGTCACCAACAGAAAACGAAACTGTAAACGTTTGCTTGGAGTGTAATCAGACTATCTGAAAAATAAGTACCGCATGCAGTGCTATTGGCATAGCTAACCCTAGATTCTGTGTTATCAGTCTACAACAGTAAAGTAAGTGTTCACACAGGACACATTCTTGAGTTCAAACTACTGAAAGATCACATTTGGGTTAAGCGTTAACTGGTGCATTGTTTTAAAACTAACAGTGATTCATGGACACATGGCTCAGTGACAAATACTAGGGTCCATGATTCAGAATAACAATTACTTTTTGTGTTTAGATAGGTTTTATTAGGGTTACAGTATGActttaacataattaaacatCGAATCAGGTTAAAATAGTTGtattaaatcaagtaaaataaagttaatttatattattattaattaaatattttgtttgtttttgacaaGTTGCATCACAAGACATTTTACCTCCACTAATCTGTCATAAATAGATATTGAAATCTGATATCTTAAGAGACTTACAGCCTTAATTAAGTCACAATTTTGTAGAGATAGTGTAAATGATATTATTCCAGATGCAAgttctttaatatttaatgtattatatttagcattttttatatatatattggaataaataaatatatatagtgttgttacgatactggaattcggtaccaatcagtactgaaatttttaaaatgtccatTTCTCGGGAACATGTGAGCGCTGTTCAGCATGTTCTTAAACATCGCTGAATTtctattgtgttcacatgctcagcagaaatgactgtgatcaCCGGACTCCCCGAAGTTTACAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064813 True 1053 lncRNA 0.34 2 9537670 9539292

Neighbor

gene id symbol gene type direction distance location
XLOC_031856 kalrnb coding upstream 81704 9289802 ~ 9455966 (+)
XLOC_031855 pimr70 coding upstream 295221 9241121 ~ 9242449 (+)
XLOC_031854 tbx19 coding upstream 316895 9204099 ~ 9220775 (+)
XLOC_031853 sft2d2b coding upstream 336104 9191981 ~ 9201566 (+)
XLOC_031852 si:ch211-207l14.1 coding upstream 349711 9175886 ~ 9187959 (+)
XLOC_031858 NA coding downstream 111959 9651251 ~ 9666598 (+)
XLOC_031859 tcf23 coding downstream 112411 9651703 ~ 9657694 (+)
XLOC_031860 sumo1 coding downstream 138128 9677420 ~ 9688511 (+)
XLOC_031861 als2b coding downstream 254203 9793495 ~ 9861191 (+)
XLOC_031862 mpp4l coding downstream 328134 9867426 ~ 9886822 (+)
XLOC_031851 NA non-coding upstream 364564 9163007 ~ 9173106 (+)
XLOC_031845 CR954285.2 non-coding upstream 539674 8705149 ~ 8997996 (+)
XLOC_031846 CR954285.1 non-coding upstream 766074 8771476 ~ 8771596 (+)
XLOC_031844 CU571254.1 non-coding upstream 845677 8691408 ~ 8691993 (+)
XLOC_031840 NA non-coding upstream 1084028 8450311 ~ 8453642 (+)
XLOC_031867 NA non-coding downstream 472969 10012261 ~ 10013022 (+)
XLOC_031868 NA non-coding downstream 485358 10024650 ~ 10036969 (+)
XLOC_031872 NA non-coding downstream 636565 10175857 ~ 10184750 (+)
XLOC_031874 NA non-coding downstream 837731 10377023 ~ 10398536 (+)

Expression


Co-expression Network