G1275629


Basic Information

Item Value
gene id G1275629
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 27206816 ~ 27231469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1456988
tttttttttttttttTTGATCTTCTATGAATTTTATTACCTAGAAAACGATGTCTCACAACACAACAGAGTCAAATGGTTGATTCGTAGTCTGCCTAGTCATGAAGTTGTTTGTTGGAATTGGAAAAGGGAAGCATGAAATCAATATGGCAATGGCTCacaaaaatgatttgataaaaaTTATTGTTTTTATCAAATGTTATAAAATGTAGTTAAAGGGCAATtacaccacttttcaacctcatattcattatctccagcacaatatcAGTGTATGAAAAGGACACGTTTTTACATTTTGTGGTTAAAAACTAAGAAAGctcctaaaaatatatatacttgatGACGTCATTGAGTAGGATTAAAAGTAAAAACTGTGATTTTCAAAACATGCAACGAGTTTCTAGCCAGGGGAAGGGCATTTTCCTGCTCCTGCGTGACCATGAATCTCatagtgtttgaaaatcactgtttttagaatgtttttaCTTTTGATGACATCATTTTTCACTGGATCTTTTTTTagacactggtatggtgctggagataatgaatatgaacTTGAAAAGTGGTGGTATGCCCTTTAAACAATAGTGATCTTGGCACAAACTAAAAATTCCACCAGTGTGTTATAAATGCAGTACATTCTAATTCTGTCTCATGAACCATCTATTCTATGGTATTTCACTCATCAGTATCATTCTTGGTGCTGGATAGGAGAGTCGGGGCTCCACTGGTGTAGCTCATCTTGCGACAGTGCTCTTGTCTTGTTGTCGACATAGCctttgTTAGTTTTGGTTTGTGGAGACAGTGGACATACGGCTTGGGGTCTTTCTCAATCTCTCCGGCAAATGTTTTGTAACAAATTCCACAGTCCATCAGTGGTCGGTCATTCCTGAATTGGCATCGCTGATGGCTTGGATTAACGGTTCCCCTGGCACAGGTGGTGGCTTTCAAGTAGAAATTGTGGTAGATGTATTGTACATTAAACCCAGActctatgTCAGACTTCAGGAGACTCTTGAAGAAGAGAAAATGGTGCTGGACTCCAAAATGAGAGTTGAGTTGTTGCAGAGCCAGATCCACTCCTTTCCTGTACTTGTCAGGGAGTTTACTATAAGCCTCCTGAGCCTCAATAGAAGGCAGCAGGACTCCAGCACttaacaacaacagcagcagtagagcAGCCATCTTCCTCCCAGTGTGTGTGGAGCAGCCTGACTAAGGCAACTCTGTG
>TU1456986
GCCGTTGCCACGCCTCTGAAACCGCCTGGGAAAAGGCAGGTCTCTAGCTATGTGGACTTCATTACACATTACGCATTGTTACACATTGTTACTCCCCCTAAGCAGTTATGTAACTTACCAGCACTAGAATTGTCTTTCCAAAATGAATAGCAGTGATACAATACCATTTTCTTGATCTTCTATGAATTTTATTACCTAGAAAACGATGTCTCACAACACAACAGAGTCAAATGGTTGATTCGTAGTCTGCCTAGTCATGAAGTTGTTTGTTGGAATTGGAAAAGGGAAGCATGAAATCAATATGGCAATGGCTCacaaaaatgatttgataaaaaTTATTGTTTTTATCAAATGTTATAAAATGTAGTTAAAGGGCAATtacaccacttttcaacctcatattcattatctccagcacaatatcAGTGTATGAAAAGGACACGTTTTTACATTTTGTGGTTAAAAACTAAGAAAGctcctaaaaatatatatacttgatGACGTCATTGAGTAGGATTAAAAGTAAAAACTGTGATTTTCAAAACATGCAACGAGTTTCTAGCCAGGGGAAGGGCATTTTCCTGCTCCTGCGTGACCATGAATCTCatagtgtttgaaaatcactgtttttagaatgtttttaCTTTTGATGACATCATTTTTCACTGGATCTTTTTTTagacactggtatggtgctggagataatgaatatgaacTTGAAAAGTGGTGGTATGCCCTTTAAACAATAGTGATCTTGGCACAAACTAAAAATTCCACCAGTGTGTTATAAATGCAGTACATTCTAATTCTGTCTCATGAACCATCTATTCTATGGTATTTCACTCATCAGTATCATTCTTGGTGCTGGATAGGAGAGTCGGGGCTCCACTGGTGTAGCTCATCTTGCGACAGTGCTCTTGTCTTGTTGTCGACATAGCctttgTTAGTTTTGGTTTGTGGAGACAGTGGACATACGGCTTGGGGTCTTTCTCAATCTCTCCGGCAAATGTTTTGTAACAAATTCCACAGTCCATCAGTGGTCGGTCATTCCTGAATTGGCATCGCTGATGGCTTGGATTAACGGTTCCCCTGGCACAGGTGGTGGCTTTCAAGTAGAAATTGTGGTAGATGTATTGTACATTAAACCCAGActctatgTCAGACTTCAGGAGACTCTTGAAGAAGAGAAAATGGTGCTGGACTCCAAAATGAGAGTTGAGTTGTTGCAGAGCCAGATCCACTCCTTTCCTGTACTTGTCAGGGAGTTTACTATAAGAAGAGATAACGGCGCTGGACTCCAGAATGAGAGTTGAGCTGTTGCAGAGCCAGATCCACTCCTTTCCTGTACTTGTCAGGGAGTTTACTGTAAGCCTCCTGAGCTTCAATAGAAGACAGCAGGACTCCAGCACttaacaacaacagcagcagagcAGACATCTTCCTACCAGTGTGTGTGGAGCAGACTGACTGAGGTCATTGTTCTGTATTAGT
>TU1456989
TGCACATCAAATTTTAATAtttttcttgatcaaataacatggaaaacaaccactTATTGTGAAGTATTAATttaccatccttacaaaccacaATGTAAATGAAcattactgtattatactgtacatctAAGTTTGGTACCTGAAGACTTTTAatcaccatgaagaaaaacaatgcaCAATACATTAATTTAGTACATTGAGATGTTAAATGGTTTgtgatgtggctcagttggtagagcatggcacttgcaacactagtagttgtgggttcaattcccacaggggaccagtacaaaaatgtatgcactcactcagtggtgtaaagtacttaagtacaaaaacttgaaagtactacttaagcagTTGTTTCGGGTGTCTGTACttcactttactatttatatttttgacaacttttactttaacttcactacattcctaaagaaaatgatgtacccctgacacccaaaagtactcgttacatttagaACGCTTAGCTGGACAGGAAAATgatctaattcacacacttatcaagataacatcccttgtcatcccaactgcctctgatctggcggactcactaaacacatgcttcatttgtaaatgatgtcagtgttggagtgtgcccctggctatccatacattaaaaaacaagaaaatggtgccgcctggctttcttaatataaggaattttaaattctTTAAACTTTTACTTCTACTTTTGACACATATTTTAgcgattacatttactttttatacttaagtatatttaaaaaccaaatacttttagatgtttactcaagtagaattgtACTGGGCAactttctatgaaggtatctttacttttactcaagtatgacaattggatattttttccaccactgcactcactactgtaaattgctctggaaaAGAGAATCTACTAAAATGTCAAAAGAATGAATCGACCATTTCAGTCCCCACAGAGAAATAAGTTGCATTTGCAAAGTAGTTCAAGAAACAGGAAAACAAATATCAAGCAATATTTGTATATTCCACAAGTATTATCAGATTAACTGTTTTGTACAGATTATTATCAGACTCAAGTTACAAATGCtgataactaaatgtagttgagAGTTTAACAttttttcacaaaagtagtgcactagtcctgtattagcagaccgatATAGGCATCTTTAAAAAACACAAACCTTAGTGTGTTTAAAGTTGTTAGATACTGTACTTGAGGAAGTTGAACACAGAATAACGAATACAGATGAAATGAGGGTGCCTCTACAGACTACATTCAGATGTAAGCCTATCGTGCAATACAAACGTTTTATCATGGCCACAAAACGACATTACTCCCATTGCCAAGAATTTCACTTGGAACCCTTTGAAGCCAGGATAGTTGCGTCTCCACTTTGGTAACTCATTGTGTTACAGCGATCCACTCTTGCTGTCTTCATATCCTCTGTAAGAACTGGTTTGTGGAGACAGTGGACATACGGCTTGGGCTCCTTCTCAATATTTCCAGCAAAGGTTTTGTAGCAGATTGCACAGTCTATCAATGGCGGTCGTCCCTGAACTTGCATTGCGTGACGTCAACTGTTCCCTTTCCACACTTGGTGGCTTTCAGGTAGAAATTGTGATAAATATAGCTCACATCAAATCCAGGCTAgaagaaaaaaatgtataaaagcaTTGTAGACTAAACCATAAACATTTACCAGCGAGGTCTACACAAAATGGTTCTG

Function

NR:

description
uncharacterized protein LOC110489905

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1456988 False 1236 lncRNA 0.39 5 27206816 27226956
TU1456986 False 1491 lncRNA 0.40 5 27225068 27231469
TU1456989 True 1739 lncRNA 0.36 3 27228880 27231104

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-66 NA coding upstream 113253 27093489 ~ 27093563 (+)
kif9 kif9 coding upstream 232767 26960749 ~ 26974049 (+)
LOC110489897 LOC100380682 coding upstream 278034 26923894 ~ 26928782 (+)
LOC110489896 LOC106590184 coding upstream 288168 26860119 ~ 26918648 (+)
topbp1 LOC106590185 coding upstream 357784 26811022 ~ 26849032 (+)
LOC110489907 LOC106590173 coding downstream 101017 27332486 ~ 27350841 (+)
chpf2 LOC106590171 coding downstream 130334 27361803 ~ 27369326 (+)
asap1b LOC106590164 coding downstream 220811 27452280 ~ 27519315 (+)
fam49bb LOC106590167 coding downstream 292656 27524125 ~ 27563497 (+)
LOC110489920 LOC106590161 coding downstream 540148 27771617 ~ 27795387 (+)
G1275637 NA non-coding upstream 11581 27189834 ~ 27195235 (+)
G1275576 NA non-coding upstream 101324 27105283 ~ 27105492 (+)
G1275573 NA non-coding upstream 103699 27102837 ~ 27103117 (+)
G1275563 LOC106590178 non-coding upstream 116724 27079719 ~ 27090092 (+)
G1275272 NA non-coding upstream 224359 26975679 ~ 26982457 (+)
G1275682 NA non-coding downstream 30845 27262314 ~ 27285241 (+)
G1275724 NA non-coding downstream 60369 27291838 ~ 27292098 (+)
G1275732 NA non-coding downstream 66867 27298336 ~ 27298565 (+)
G1275734 NA non-coding downstream 67882 27299351 ~ 27299612 (+)
G1275735 NA non-coding downstream 68212 27299681 ~ 27299899 (+)
G1275572 NA other upstream 104789 27101309 ~ 27102027 (+)
G1274830 NA other upstream 764429 26440011 ~ 26442387 (+)
G1274765 NA other upstream 841670 26364278 ~ 26365146 (+)
rbis cssa29h8orf59 other upstream 2232103 24968304 ~ 24976522 (+)
G1276288 NA other downstream 622149 27853618 ~ 27854013 (+)
G1276733 NA other downstream 958717 28190186 ~ 28256406 (+)
G1277159 NA other downstream 1342847 28574316 ~ 28624218 (+)
G1277279 NA other downstream 1583897 28815366 ~ 28815810 (+)
G1279349 NA other downstream 3071564 30303033 ~ 30303419 (+)

Expression


Co-expression Network