Fish Transcriptome and Expression Database

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model fish

XLOC_031858

Basic Information

Item	Value
gene id	XLOC_031858
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	9651251 ~ 9666598 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064602
TTACACCATactgaaaacaaaacactttacGGAAAGCCAAAAAGGCCAAAAACTCAAAACTGACAGGGTTTTTCCCCAGCTCAACGTAACATCAGGTCTCTTTATCCACATATCCTTGAGAAGCGTGTCCTGATCAACAGCCGTCAGTCTGACAGTAACTCTGCAGTGTTTGATTTACCATCAGTTCTCTGGATTGGCCAATAGCAGATACGTGTTGAtaa

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00064602	True	221	lncRNA	0.42	2	9651251	9666598

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_031857	NA	coding	upstream	111959	9537670 ~ 9539292 (+)
XLOC_031856	kalrnb	coding	upstream	195285	9289802 ~ 9455966 (+)
XLOC_031855	pimr70	coding	upstream	408802	9241121 ~ 9242449 (+)
XLOC_031854	tbx19	coding	upstream	430476	9204099 ~ 9220775 (+)
XLOC_031853	sft2d2b	coding	upstream	449685	9191981 ~ 9201566 (+)
XLOC_031860	sumo1	coding	downstream	10822	9677420 ~ 9688511 (+)
XLOC_031861	als2b	coding	downstream	126897	9793495 ~ 9861191 (+)
XLOC_031862	mpp4l	coding	downstream	200828	9867426 ~ 9886822 (+)
XLOC_031863	pimr74	coding	downstream	226956	9893554 ~ 9894889 (+)
XLOC_031864	tmem237b	coding	downstream	232085	9898683 ~ 9916534 (+)
XLOC_031851	NA	non-coding	upstream	478145	9163007 ~ 9173106 (+)
XLOC_031845	CR954285.2	non-coding	upstream	653255	8705149 ~ 8997996 (+)
XLOC_031846	CR954285.1	non-coding	upstream	879655	8771476 ~ 8771596 (+)
XLOC_031844	CU571254.1	non-coding	upstream	959258	8691408 ~ 8691993 (+)
XLOC_031867	NA	non-coding	downstream	345663	10012261 ~ 10013022 (+)
XLOC_031868	NA	non-coding	downstream	358052	10024650 ~ 10036969 (+)
XLOC_031872	NA	non-coding	downstream	509259	10175857 ~ 10184750 (+)
XLOC_031874	NA	non-coding	downstream	710425	10377023 ~ 10398536 (+)
XLOC_031875	NA	non-coding	downstream	765153	10431751 ~ 10432077 (+)

Expression

Co-expression Network