XLOC_031865 (cyp20a1)


Basic Information

Item Value
gene id XLOC_031865
gene name cyp20a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 9952678 ~ 9969458 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062406
TAGAGGGGCGCAGGTTCCTGATGGTCATTGTAGACGTGGATCGCCAGCTCGTAGTTCACTGAACTACTTACATATGTTCATGAAAAACCTTAGACTTTCCTGAAAAGCAAAAATGCTAGATTTTGCCATTTTTGCTGTGACATTTGTCATCATTCTGATTGGTGCCGTCCTGTATTTATATCCGTCATCTAGACGAGCTTCTGGTGTACCTGGACTAAACCCAACAGAAGAGAAAGATGGGAATCTTCAAGACATCGTGAACAAAGGAAGTCTCCATGAGTTTCTGGTGGGTCTTCATGATGAGTTTGGGTCTGTGGCATCTTTCTGGTTCGGGGCGAGACCAGTGGTGAGCCTGGGTGCTGTGAACCAACTACGACAACACATCAACCCTAACTGGACCACGGATTCATTTGAGACGATGCTTAAGTCGTTGCTGGGCTACCAGTCCGGTTCAGGAGTTGGACTGACAGAGTCCATGATGAGAAAAAAAGTGTATGAAGGAGCTATCAATAAAACTCTGGAGAACAACTTCCCTCTGTTGCTTCAGCAAGTTGAGGAGCTGGTTGATAAGTGGGCCTCCTATCCTAAATCTCAGCACATGCCTCTCTGTGCTCATCTTCTTGGATTAGCTATGAAAGCTGTCACTCAGCTGGCCATGGGGAGTCGCTTTCGGGACGATGCTGAGGTCATTCGCTTTCGTAAGAACCATGAAGCGATCTGGTCAGAGATTGGAAAAGGTTACCTGGATGGATCCTTAGAGAAGAGCTCAAGCAGAAAGGCCCATTATGAGAGTGcgTTGGCTGAGATGGAGTCAGTGTTGAAGTCTGTGGCAAAGCAGAGGCCTGGACAAGGGTCCAGTCAGTCGTCTTTTGTTAACTATTTACTACAGGCTAATCTGACAGAGCGACAGGTGATGGAAGATGGTATGGTTTTTACTTTAGCCGGCTGTGTCATCACTGCTAACTTGTGTATCTGGGCAGTTCACTTCCTGTCAGTCTCTGAAGCAGTGCAGGACCGGCTCTATCATGAGCTTGTTGAAGTGCTCGGAGATGAGCCTGTCAGCTTGGAGAAGATTCCACAGCTTCGATACTGCCAGCAGGTGCTGAATGAAACCGTCCGCACTGCTAAACTAACGCCCGTGGCTGCCAGATTACAGGAGGTGGAAGGAAAGGTGGACCAACACGTCATTCCCAAAGAAACACTGGTTATCTATGCCCTTGGTGTCGTCCTTCAGGATGCAGATACTTGGTCACTTCCATACAGGTTTAATCCTGACAGATTTGCTGAAGAGTCAGTAATGAAGAGCTTCTCGCTGCTTGGGTTTTCAGGAAGTCAGGCCTGCCCTGAATTAAGATTTGCATACACAGTGGCCACAGTGCTGCTCAGCACACTGGTGCGCAGGTTGAGAATGCACAGGGTGGACGGGCAGGTGGTTGAGGCCCGGTATGAGCTGGTGACCACACCCAAAGATGACACCTGGATCACGGTCAGCAAGAGAAACTGAACCACTCCAACATCCATGAAACAGCGCCCTCTGGAGGATGGGAATTACACATGAATGATCACATGGTTTACATGCAGTGTGGTTGAGCAATTTATAAGATCAAAGCAATGTCCAGGTTATTAACACTATTCGCCACAGTTTTTAGAGCTTCATTCTTTTGAAGTGCTTTGGACAACAACATTCCAGAAATGATCAGTGTTTAACTGCAATTTTCTAcactaataaaaaaagaagtgtgCTTCTGTCA

Function

symbol description
cyp20a1 Predicted to enable heme binding activity; iron ion binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism; male organism; and notochord. Orthologous to human CYP20A1 (cytochrome P450 family 20 subfamily A member 1).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2646 Predicted to enable heme binding activity; iron ion binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism; male organism; and notochord. Orthologous to human CYP20A1 (cytochrome P450 family 20 subfamily A member 1).

Ensembl:

ensembl_id ENSDARG00000006040

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062406 True 1751 mRNA 0.47 13 9952678 9969458

Neighbor

gene id symbol gene type direction distance location
XLOC_031864 tmem237b coding upstream 36144 9898683 ~ 9916534 (+)
XLOC_031863 pimr74 coding upstream 57789 9893554 ~ 9894889 (+)
XLOC_031862 mpp4l coding upstream 65856 9867426 ~ 9886822 (+)
XLOC_031861 als2b coding upstream 91487 9793495 ~ 9861191 (+)
XLOC_031860 sumo1 coding upstream 264167 9677420 ~ 9688511 (+)
XLOC_031866 abi2b coding downstream 1275 9970733 ~ 10010348 (+)
XLOC_031867 NA coding downstream 42803 10012261 ~ 10013022 (+)
XLOC_031868 NA coding downstream 55192 10024650 ~ 10036969 (+)
XLOC_031869 sucla2 coding downstream 67794 10037252 ~ 10056640 (+)
XLOC_031870 htr2ab coding downstream 108298 10077756 ~ 10088463 (+)
XLOC_031858 NA non-coding upstream 286080 9651251 ~ 9666598 (+)
XLOC_031857 NA non-coding upstream 413386 9537670 ~ 9539292 (+)
XLOC_031851 NA non-coding upstream 779572 9163007 ~ 9173106 (+)
XLOC_031845 CR954285.2 non-coding upstream 954682 8705149 ~ 8997996 (+)
XLOC_031872 NA non-coding downstream 206399 10175857 ~ 10184750 (+)
XLOC_031874 NA non-coding downstream 407565 10377023 ~ 10398536 (+)
XLOC_031875 NA non-coding downstream 462293 10431751 ~ 10432077 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_03550821_03556930 CYP20A1 coding CI01000024 null 3550560 ~ 3556930 (-)