G1276776


Basic Information

Item Value
gene id G1276776
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28319207 ~ 28319579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1458245
tccaatacAGCGAataactgagtaccactctccatatttttaagcattgtggtggctgcatcatgttatgcttgtaattgtttttcaggataaaaaataaacgtaattgagctaagcacagacaaaatccttgaggaaaacctggttcagtctgctttccaccagacaataggagatgaattcacctttcagtaggacaacagcctaaaacacaaggccaaatctacactagagttgcttaccaagaagacagtgaatgttcctgagtggccgagttacagttttgacttaaatctgcttgaaaagctatggcaagacctgaaaatggttgtctagcaatgacagAGGTTGAAGAAATTTGAAAAGAAcgagc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1458245 True 373 lncRNA 0.39 1 28319207 28319579

Neighbor

gene id symbol gene type direction distance location
LOC110489939 LOC106590143 coding upstream 2837 28281872 ~ 28316370 (+)
myom1b LOC106590144 coding upstream 37479 28246518 ~ 28281728 (+)
chmp5b LOC106590149 coding upstream 91520 28222578 ~ 28227687 (+)
LOC110489932 LOC106590150 coding upstream 102962 28205717 ~ 28216245 (+)
LOC110489931 LOC106590150 coding upstream 114918 28200612 ~ 28204289 (+)
mettl4 mettl4 coding downstream 58225 28377804 ~ 28389529 (+)
LOC110489944 LOC106590138 coding downstream 261044 28580623 ~ 28612037 (+)
LOC100136716 LOC106590136 coding downstream 318168 28637747 ~ 28698956 (+)
LOC110490831 LOC106590071 coding downstream 411497 28731076 ~ 28741476 (+)
LOC110489948 mrc1 coding downstream 437209 28756788 ~ 28777089 (+)
G1276771 NA non-coding upstream 39624 28279130 ~ 28279583 (+)
G1276682 NA non-coding upstream 82381 28234407 ~ 28236826 (+)
G1276658 NA non-coding upstream 215595 28103320 ~ 28103612 (+)
G1276655 NA non-coding upstream 217514 28101486 ~ 28101693 (+)
G1276640 NA non-coding upstream 227451 28091430 ~ 28091756 (+)
G1276777 NA non-coding downstream 388 28319967 ~ 28320341 (+)
G1276778 NA non-coding downstream 829 28320408 ~ 28320958 (+)
G1276779 NA non-coding downstream 1401 28320980 ~ 28321879 (+)
G1276786 NA non-coding downstream 15279 28334858 ~ 28335882 (+)
G1276800 NA non-coding downstream 65767 28385346 ~ 28386056 (+)
G1276733 NA other upstream 62801 28190186 ~ 28256406 (+)
G1276288 NA other upstream 465194 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1217180 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1356981 26960749 ~ 26974049 (+)
G1274830 NA other upstream 1876820 26440011 ~ 26442387 (+)
G1277159 NA other downstream 254737 28574316 ~ 28624218 (+)
G1277279 NA other downstream 495787 28815366 ~ 28815810 (+)
G1279349 NA other downstream 1983454 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 2076288 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2624592 30944171 ~ 30947330 (+)

Expression


Co-expression Network