XLOC_031866 (abi2b)


Basic Information

Item Value
gene id XLOC_031866
gene name abi2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 9970733 ~ 10010348 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062407
TGGTGTTTTCCTCCTGCATGCATCAGTGAGGGAGAGGGAGTGTGATGGTGGTGTTTTCCTCCTGCATGCATCAGTAAAATGTGAAGATGGCGGAGCTGCAGATGCTGCTGGAAGAGGAGATTCCTGCTGGTCGAGGAGCTTTGCTGGACAGCTACGCCAACCTAGAGAGAGTCGCCGAGTACTGCGAGAGCAATTACATACAGTCTCCAGATAAGCACAGAGCTCTAGAAGAGACCAAAAGCTACACCACTCAGTCTTTGGCCAGTGTTGCGTATCTGATCAACACTCTTGCCAACAATGTGCTCCAGATGCTGGATATACAGGCGTCCCAGCTACGCCGCATGGAGTCATCCATCAACCACATCTCGCAGACGGTTGACATCCATAAAGAGAAGGTGGCCAGGCGAGAGATTGGCATCCTCACCACCAATAAGAACACTTCTCGCACGCACAAGATCATCGCACCAGCCAATCCTGAGAGGCCTGTGCGCTACATCCGCAAGCCCATTGACTACAGTCTGCTGGATGACGTAGGCCATGGCGTAAAGGTGAATGCTCAGAATATGAAAGCGGGAACAACTCCACACACAGCAGCCCCGACCCAGAAACCCCCAAGCCCTCCCGGACCTGGCAAAGGAACCCTTGGGCGCCACTCCCCTTACCGGACGCTTGAGCCTGTGCGTCCACCTGTCGTCCCAAACGACTATGTGCCGAGTCCAACACGAAACACTGCACCACCCCTGCAGAGCCCGGCTAGAACTGCATCCGTTAATCAGAGGACCCGCACGTACAGcagtggcAGCAGTGGCGGCAGTCACCCCAGCAGTCGCAGCAGCAGCAGAGAGAACAGTGGGAGTGGCAGTGTGGGTGTGCCCATCGCCGTGCCAACCCCTGCCCCGCCCACCGCCTTTCCTGGGAATGGACCTCACTTTTACAGTATGAACCGGCCAATGACGCGGCACACCACGCCTTCAGTGGGCGGGTCCCTGCCCTATCGCAGACCGTCATCAGTTACTGGACAGCCCAACAACATGCCTCAAAACACTAATCCAAACATGATACAAAACCAGCTTAATGGAGGGCCACACTACAACCAAAACCAAGtctcGGACGCTCCTCCACCGCCGCCTCCAGCAGAAGAGGTTGAGTTTGAGGAAGAGACGCCGCCTCCGCCTCCTCCAGAGGACTATGAGGATGAGGAGGGTGAGGAGGATGAAGAGTCCGCTGTGGTAGAGTACAGCGACCCTTACGCTGAAGAAGACCCTCCGTGGGCCCCGCGCAGCTACCTGGAGAAAGTGGTGGCGATTTACGACTACACACGTGACAAAGAAGACGAGCTGTCCTTTCAGGAGGGAGCCATCATTTACGTCATCAAGAAGAACGATGACGGCTGGTATGAGGGGGTGATGAGCGGCACCACAGGCCTTTTCCCTGGAAACTACGTGGAGTCCATCATGCATTACGCTGACTGAACCAGCAGGTGGCGCCACTGCTCCTCTGTCCATCATCTTCCTCATTCACTGAAACACACACCAGTCCAGCTACACTACGTCATGCGCAGGCTTGTTGCAGACATGCAAACCCATGACTTGGTTTGAGAGCCGCAGGAAAAACTGTAAGATAAAGACATTAGGGACGTTTATTCATCTCTTTAATTTCGATCTCTTAGAAACATGTATCTCTTAGAAACATGTATCAGATAAAGTGTTGGTTTTGCTTGACTTGTGTTGATAGTGATCGCTTTGCTTTCGCTCCTCGCCGTTTCGACGAATGGGGCAGTTTTACTCATGTCATCACCAAATTCGAAGGCGGCAATCATGGATGTGCATGTTCCAtctcttttggttttgtttttaaacagttgACCAGCAAAAAATGAGAGAAAAGCTATTGCCAAGAGTGACAGAACAGGGGAGTTTATATGCACAATGGGTTGCCAGGTCATAAAGGGGTGATGTATA
>TCONS_00062408
GATGGCGGAGCTGCAGATGCTGCTGGAAGAGGAGATTCCTGCTGGTCGAGGAGCTTTGCTGGACAGCTACGCCAACCTAGAGAGAGTCGCCGAGTACTGCGAGAGCAATTACATACAGTCTCCAGATAAGCACAGAGCTCTAGAAGAGACCAAAAGCTACACCACTCAGTCTTTGGCCAGTGTTGCGTATCTGATCAACACTCTTGCCAACAATGTGCTCCAGATGCTGGATATACAGGCGTCCCAGCTACGCCGCATGGAGTCATCCATCAACCACATCTCGCAGACGGTTGACATCCATAAAGAGAAGGTGGCCAGGCGAGAGATTGGCATCCTCACCACCAATAAGAACACTTCTCGCACGCACAAGATCATCGCACCAGCCAATCCTGAGAGGCCTGTGCGCTACATCCGCAAGCCCATTGACTACAGTCTGCTGGATGACGTAGGCCATGGCGTAAAGTGGTTACTAAGGTTTAAGGTGAATGCTCAGAATATGAAAGCGGGAACAACTCCACACACAGCAGCCCCGACCCAGAAACCCCCAAGCCCTCCCGGACCTGGCAAAGGAACCCTTGGcagtggcAGCAGTGGCGGCAGTCACCCCAGCAGTCGCAGCAGCAGCAGAGAGAACAGTGGGAGTGGCAGTGTGGGTGTGCCCATCGCCGTGCCAACCCCTGCCCCGCCCACCGCCTTTCCTGGGAATGGACCTCACTTTTACAGTATGAACCGGCCAATGACGCGGCACACCACGCCTTCAGTGGGCGGGTCCCTGCCCTATCGCAGACCGTCATCAGTTACTGGACAGCCCAACAACATGCCTCAAAACACTAATCCAAACATGATACAAAACCAGCTTAATGGAGGGCCACACTACAACCAAAACCAAGTCCCCATGGCCCCCCCTCCACCCTCTATTCTCCAGATCACCCCTCAGCTGCCGCTCATGGGCTTTGTGGCTCGGGTTCAGGAGACCAtctcGGACGCTCCTCCACCGCCGCCTCCAGCAGAAGAGGTTGAGTTTGAGGAAGAGACGCCGCCTCCGCCTCCTCCAGAGGACTATGAGGATGAGGAGGGTGAGGAGGATGAAGAGTCCGCTGTGGTAGAGTACAGCGACCCTTACGCTGAAGAAGACCCTCCGTGGGCCCCGCGCAGCTACCTGGAGAAAGTGGTGGCGATTTACGACTACACACGTGACAAAGAAGACGAGCTGTCCTTTCAGGAGGGAGCCATCATTTACGTCATCAAGAAGAACGATGACGGCTGGTATGAGGGGGTGATGAGCGGCACCACAGGCCTTTTCCCTGGAAACTACGTGGAGTCCATCATGCATTACGCTGACTGAACCAGCA
>TCONS_00062410
ATGGCGGAGCTGCAGATGCTGCTGGAAGAGGAGATTCCTGCTGGTCGAGGAGCTTTGCTGGACAGCTACGCCAACCTAGAGAGAGTCGCCGAGTACTGCGAGAGCAATTACATACAGTCTCCAGATAAGCACAGAGCTCTAGAAGAGACCAAAAGCTACACCACTCAGTCTTTGGCCAGTGTTGCGTATCTGATCAACACTCTTGCCAACAATGTGCTCCAGATGCTGGATATACAGGCGTCCCAGCTACGCCGCATGGAGTCATCCATCAACCACATCTCGCAGACGGTTGACATCCATAAAGAGAAGGTGGCCAGGCGAGAGATTGGCATCCTCACCACCAATAAGAACACTTCTCGCACGCACAAGATCATCGCACCAGCCAATCCTGAGAGGCCTGTGCGCTACATCCGCAAGCCCATTGACTACAGTCTGCTGGATGACGTAGGCCATGGCGTAAAGGTGAATGCTCAGAATATGAAAGCGGGAACAACTCCACACACAGCAGCCCCGACCCAGAAACCCCCAAGCCCTCCCGGACCTGGCAAAGGAACCCTTGGGCGCCACTCCCCTTACCGGACGCTTGAGCCTGTGCGTCCACCTGTCGTCCCAAACGACTATGTGCCGAGTCCAACACGAAACACTGCACCACCCCTGCAGAGCCCGGCTAGAACTGCATCCGTTAATCAGAGGACCCGCACGTACAGcagtggcAGCAGTGGCGGCAGTCACCCCAGCAGTCGCAGCAGCAGCAGAGAGAACAGTGGGAGTGGCAGTGTGGGTGTGCCCATCGCCGTGCCAACCCCTGCCCCGCCCACCGCCTTTCCTGGGAATGGACCTCACTTTTACAGTATGAACCGGCCAATGACGCGGCACACCACGCCTTCAGTGGGCGGGTCCCTGCCCTATCGCAGACCGTCATCAGTTACTGGACAGCCCAACAACATGCCTCAAAACACTAATCCAAACATGATACAAAACCAGCTTAATGGAGGGCCACACTACAACCAAAACCAAGTCCCCATGGCCCCCCCTCCACCCTCTATTCTCCAGATCACCCCTCAGCTGCCGCTCATGGGCTTTGTGGCTCGGGTTCAGGAGACCAtctcGGACGCTCCTCCACCGCCGCCTCCAGCAGAAGAGGTTGAGTTTGAGGAAGAGACGCCGCCTCCGCCTCCTCCAGAGGACTATGAGGATGAGGAGGGTGAGGAGGATGAAGAGTCCGCTGTGGTAGAGTACAGCGACCCTTACGCTGAAGAAGACCCTCCGTGGGCCCCGCGCAGCTACCTGGAGAAAGTGGTGGCGATTTACGACTACACACGTGACAAAGAAGACGAGCTGTCCTTTCAGGAGGGAGCCATCATTTACGTCATCAAGAAGAACGATGACGGCTGGTATGAGGGGGTGATGAGCGGCACCACAGGCCTTTTCCCTGGAAACTACGTGGAGTCCATCATGCATTACGCTGACTGA
>TCONS_00062409
ATGGCGGAGCTGCAGATGCTGCTGGAAGAGGAGATTCCTGCTGGTCGAGGAGCTTTGCTGGACAGCTACGCCAACCTAGAGAGAGTCGCCGAGTACTGCGAGAGCAATTACATACAGTCTCCAGATAAGCACAGAGCTCTAGAAGAGACCAAAAGCTACACCACTCAGTCTTTGGCCAGTGTTGCGTATCTGATCAACACTCTTGCCAACAATGTGCTCCAGATGCTGGATATACAGGCGTCCCAGCTACGCCGCATGGAGTCATCCATCAACCACATCTCGCAGACGGTTGACATCCATAAAGAGAAGGTGGCCAGGCGAGAGATTGGCATCCTCACCACCAATAAGAACACTTCTCGCACGCACAAGATCATCGCACCAGCCAATCCTGAGAGGCCTGTGCGCTACATCCGCAAGCCCATTGACTACAGTCTGCTGGATGACGTAGGCCATGGCGTAAAGTGGTTACTAAGGTTTAAGGTGAATGCTCAGAATATGAAAGCGGGAACAACTCCACACACAGCAGCCCCGACCCAGAAACCCCCAAGCCCTCCCGGACCTGGCAAAGGAACCCTTGGGCGCCACTCCCCTTACCGGACGCTTGAGCCTGTGCGTCCACCTGTCGTCCCAAACGACTATGTGCCGAGTCCAACACGAAACACTGCACCACCCCTGCAGAGCCCGGCTAGAACTGCATCCGTTAATCAGAGGACCCGCACGTACAGcagtggcAGCAGTGGCGGCAGTCACCCCAGCAGTCGCAGCAGCAGCAGAGAGAACAGTGGGAGTGGCAGTGTGGGTGTGCCCATCGCCGTGCCAACCCCTGCCCCGCCCACCGCCTTTCCTGGTACAACGCCTGCCCCTCCAAACCCTCCCAAACCCCCTCCCACCATTACTATCCCTGCCCCTCCTGTACCTCCACCGCCCCCCACCCCAGAGCCGGTGCTGCCTGCCCCTGCCCCAACCCCTGCCCCGCCAGCAGAGGGCCCTCCCGAGATCCCACCGCCCCCACAGCTGCCCCCAAACCTCCCTGTAAGCACCAACACCAACCCTGCTGCTGCAACCAGCACCCCTGCTCAAGGGAATGGACCTCACTTTTACAGTATGAACCGGCCAATGACGCGGCACACCACGCCTTCAGTGGGCGGGTCCCTGCCCTATCGCAGACCGTCATCAGTTACTGGACAGCCCAACAACATGCCTCAAAACACTAATCCAAACATGATACAAAACCAGCTTAATGGAGGGCCACACTACAACCAAAACCAAGTCCCCATGGCCCCCCCTCCACCCTCTATTCTCCAGATCACCCCTCAGCTGCCGCTCATGGGCTTTGTGGCTCGGGTTCAGGAGACCAtctcGGACGCTCCTCCACCGCCGCCTCCAGCAGAAGAGGTTGAGTTTGAGGAAGAGACGCCGCCTCCGCCTCCTCCAGAGGACTATGAGGATGAGGAGGGTGAGGAGGATGAAGAGTCCGCTGTGGTAGAGTACAGCGACCCTTACGCTGAAGAAGACCCTCCGTGGGCCCCGCGCAGCTACCTGGAGAAAGTGGTGGCGATTTACGACTACACACGTGACAAAGAAGACGAGCTGTCCTTTCAGGAGGGAGCCATCATTTACGTCATCAAGAAGAACGATGACGGCTGGTATGAGGGGGTGATGAGCGGCACCACAGGCCTTTTCCCTGGAAACTACGTGGAGTCCATCATGCATTACGCTGACTGA
>TCONS_00062411
CGGAGCTGCAGATGCTGCTGGAAGAGGAGATTCCTGCTGGTCGAGGAGCTTTGCTGGACAGCTACGCCAACCTAGAGAGAGTCGCCGAGTACTGCGAGAGCAATTACATACAGTCTCCAGATAAGCACAGAGCTCTAGAAGAGACCAAAAGCTACACCACTCAGTCTTTGGCCAGTGTTGCGTATCTGATCAACACTCTTGCCAACAATGTGCTCCAGATGCTGGATATACAGGCGTCCCAGCTACGCCGCATGGAGTCATCCATCAACCACATCTCGCAGACGGTTGACATCCATAAAGAGAAGGTGGCCAGGCGAGAGATTGGCATCCTCACCACCAATAAGAACACTTCTCGCACGCACAAGATCATCGCACCAGCCAATCCTGAGAGGCCTGTGCGCTACATCCGCAAGCCCATTGACTACAGTCTGCTGGATGACGTAGGCCATGGCGTAAAGGTGAATGCTCAGAATATGAAAGCGGGAACAACTCCACACACAGCAGCCCCGACCCAGAAACCCCCAAGCCCTCCCGGACCTGGCAAAGGAACCCTTGGcagtggcAGCAGTGGCGGCAGTCACCCCAGCAGTCGCAGCAGCAGCAGAGAGAACAGTGGGAGTGGCAGTGTGGGTGTGCCCATCGCCGTGCCAACCCCTGCCCCGCCCACCGCCTTTCCTGGTACAACGCCTGCCCCTCCAAACCCTCCCAAACCCCCTCCCACCATTACTATCCCTGCCCCTCCTGTACCTCCACCGCCCCCCACCCCAGAGCCGGTGCTGCCTGCCCCTGCCCCAACCCCTGCCCCGCCAGCAGAGGGCCCTCCCGAGATCCCACC
>TCONS_00062412
CAGGCGTCCCAGCTACGCCGCATGGAGTCATCCATCAACCACATCTCGCAGACGGTTGACATCCATAAAGAGAAGGTGGCCAGGCGAGAGATTGGCATCCTCACCACCAATAAGAACACTTCTCGCACGCACAAGATCATCGCACCAGCCAATCCTGAGAGGCCTGTGCGCTACATCCGCAAGCCCATTGACTACAGTCTGCTGGATGACGTAGGCCATGGCGTAAAGTGGTTACTAAGGTTTAAGGTGAATGCTCAGAATATGAAAGCGGGAACAACTCCACACACAGCAGCCCCGACCCAGAAACCCCCAAGCCCTCCCGGACCTGGCAAAGGAACCCTTGGcagtggcAGCAGTGGCGGCAGTCACCCCAGCAGTCGCAGCAGCAGCAGAGAGAACAGTGGGAGTGGCAGTGTGGGTGTGCCCATCGCCGTGCCAACCCCTGCCCCGCCCACCGCCTTTCCTGGTACAACGCCTGCCCCTCCAAACCCTCCCAAACCCCCTCCCACCATTACTATCCCTGCCCCTCCTGTACCTCCACCGCCCCCCACCCCAGAGCCGGTGCTGCCTGCCCCTGCCCCAACCCCTGCCCCGCC

Function

symbol description
abi2b Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within actin polymerization or depolymerization. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI2 (abl interactor 2).

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0030027 lamellipodium cellular_component
GO:0017124 SH3 domain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060519-5 Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within actin polymerization or depolymerization. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI2 (abl interactor 2).

Ensembl:

ensembl_id ENSDARG00000014875

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062407 False 1961 mRNA 0.53 9 9970733 10010348
TCONS_00062408 False 1352 mRNA 0.56 10 9970818 10009866
TCONS_00062410 False 1473 mRNA 0.57 10 9970819 10009859
TCONS_00062409 False 1725 mRNA 0.58 12 9970819 10009859
TCONS_00062411 False 835 mRNA 0.59 6 9970823 10001009
TCONS_00062412 True 596 mRNA 0.61 6 9981300 10000982

Neighbor

gene id symbol gene type direction distance location
XLOC_031865 cyp20a1 coding upstream 1275 9952678 ~ 9969458 (+)
XLOC_031864 tmem237b coding upstream 54199 9898683 ~ 9916534 (+)
XLOC_031863 pimr74 coding upstream 75844 9893554 ~ 9894889 (+)
XLOC_031862 mpp4l coding upstream 83911 9867426 ~ 9886822 (+)
XLOC_031861 als2b coding upstream 109542 9793495 ~ 9861191 (+)
XLOC_031867 NA coding downstream 1913 10012261 ~ 10013022 (+)
XLOC_031868 NA coding downstream 14302 10024650 ~ 10036969 (+)
XLOC_031869 sucla2 coding downstream 26904 10037252 ~ 10056640 (+)
XLOC_031870 htr2ab coding downstream 67408 10077756 ~ 10088463 (+)
XLOC_031871 atp7b coding downstream 83713 10094061 ~ 10132102 (+)
XLOC_031858 NA non-coding upstream 304135 9651251 ~ 9666598 (+)
XLOC_031857 NA non-coding upstream 431441 9537670 ~ 9539292 (+)
XLOC_031851 NA non-coding upstream 797627 9163007 ~ 9173106 (+)
XLOC_031845 CR954285.2 non-coding upstream 972737 8705149 ~ 8997996 (+)
XLOC_031872 NA non-coding downstream 165509 10175857 ~ 10184750 (+)
XLOC_031874 NA non-coding downstream 366675 10377023 ~ 10398536 (+)
XLOC_031875 NA non-coding downstream 421403 10431751 ~ 10432077 (+)

Expression


Co-expression Network