G1277178 (clul1)


Basic Information

Item Value
gene id G1277178
gene name clul1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28626587 ~ 28631165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1458684
TTCAGGTTATCTTGGTTCTGATTGACAACCTGGTCTGGAGTTTCCAGTTGAGAGGATAACTTCCTGAAGAACTCTTCCACTttgaaagagaaggaggagaagccTCTCCGGCAGGTGGAGGTGTAAAATGTCTTGCACGTGTCTTCCAGGCAGGGTCGACACTCCATAAATGATGTCTTTAGCGAATGATGGCACTGCTCCTCCGCCTTCTGAAGCTTTAGCTCCGCCTCTGTGGCCAGTTGCACTGCCCCCTTCCTCTTGTCGCTACTTTCTTTGAGGGTCTTCATGAGGTGTTCATGCTTCTCTTGGTTCTTCTCCATCACCTCCTTCATCCGTTTCACCCCAAACAAGGCTCTCTTCATCTCCTCGTCAACATAACGCTCACCATCCCTCGACAGCCCCTGGAGAACATCCTCACTCAGTTCTGTGGGAGAGGGGTCGGGGCCACAGTGCAGGACTCCAAGAGATGAAATGTAGAGGGTGAGAATCAGCAGCGCTCTCATCTTCACTGGCGTACTCTCACAGGCTGcagctctgaaacacaaccaattGGTTAAATATTAGGACTTGACGTCAGAGCGATACAG

Function

symbol description
clul1 Predicted to enable misfolded protein binding activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space and nucleus. Is expressed in cranial blood vessel and photoreceptor cell. Orthologous to human CLUL1 (clusterin like 1).

NR:

description
clusterin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1458684 True 587 lncRNA 0.51 4 28626587 28631165

Neighbor

gene id symbol gene type direction distance location
LOC110489944 LOC106590138 coding upstream 14550 28580623 ~ 28612037 (+)
mettl4 mettl4 coding upstream 237058 28377804 ~ 28389529 (+)
LOC110489939 LOC106590143 coding upstream 310217 28281872 ~ 28316370 (+)
myom1b LOC106590144 coding upstream 344859 28246518 ~ 28281728 (+)
chmp5b LOC106590149 coding upstream 398900 28222578 ~ 28227687 (+)
LOC100136716 LOC106590136 coding downstream 6582 28637747 ~ 28698956 (+)
LOC110490831 LOC106590071 coding downstream 99911 28731076 ~ 28741476 (+)
LOC110489948 mrc1 coding downstream 125623 28756788 ~ 28777089 (+)
LOC110489949 mrc1 coding downstream 163915 28795080 ~ 28812062 (+)
LOC110489950 LOC106590132 coding downstream 195415 28826580 ~ 28837296 (+)
G1277177 NA non-coding upstream 255 28625505 ~ 28626332 (+)
G1277174 clul1 non-coding upstream 5878 28619969 ~ 28620709 (+)
G1277128 NA non-coding upstream 9906 28614402 ~ 28616681 (+)
G1277145 NA non-coding upstream 81602 28544680 ~ 28544985 (+)
G1277144 NA non-coding upstream 81965 28544338 ~ 28544622 (+)
G1277186 NA non-coding downstream 70038 28701203 ~ 28703108 (+)
G1277276 NA non-coding downstream 181010 28812175 ~ 28812749 (+)
G1277277 NA non-coding downstream 182018 28813183 ~ 28813383 (+)
G1277281 NA non-coding downstream 187552 28818717 ~ 28819012 (+)
G1277283 NA non-coding downstream 190758 28821923 ~ 28822261 (+)
G1277159 NA other upstream 2369 28574316 ~ 28624218 (+)
G1276733 NA other upstream 370181 28190186 ~ 28256406 (+)
G1276288 NA other upstream 772574 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1524560 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1664361 26960749 ~ 26974049 (+)
G1277279 NA other downstream 184201 28815366 ~ 28815810 (+)
G1279349 NA other downstream 1671868 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1764702 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2313006 30944171 ~ 30947330 (+)
G1281462 NA other downstream 3365002 31996167 ~ 31996513 (+)

Expression


Co-expression Network