G1277186


Basic Information

Item Value
gene id G1277186
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28701203 ~ 28703108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1458692
tttctttctttcttgtctAACCCTGATTCATAGCATTATGTCAATTCATTCAGTACACTGTAGCACGGGGCTCGATATCACAGTGCATATAATTAGAGAAACACTTCAAGTGGTACATCTTTTCCCcaaaacatttcacattctgtTTTTCCGTTCCTACCTCCATCCCTATTCCAGTTTCTCCTTCAGCTGCACAGAAGTTTGAAACGATCTGACACAGTAGCACCTTTTAGTAGAGGGAATCTAACGCTAACTACCAGTACAATACCAACCAGGACAATGGGATCCCGAACACAGATTTTTAAGCATAAAGAACAAAACAGTGACTAACTGAAGACTGTGAGAGCTCAGAAATCATTCCTCTCTTATCTTCTGTCTTCTAAGTTGGCTTGAACTTTTAAAAAACAAAGAGCTTTTCTGTAAAGTTGTTTGAGCAGTCTCAGCTACACCGAACGTACTAATAACATTCAATACAAGTGTATTACTGCCTTACAAACCATATAATATTGCCAACCAGGTGATATGTGAATAAATTAAGTCATTCTTCAAATGATCCGATCTGTGCATAAAATAGCCTACTAATGTTGCTGTTTCACATTGTTTACAAATAAAGTACAACACACATAAACCAAGGAAGCAGCATATTGCCCAAATGTCTGTTTATTGTCGAGGTATAATACGTCTATGCATAATTGTTTCTATTTTTTTAAAGCTTCTGTCTAGTCATTGTTGCCACACGCTATTTACGTATAAAATCACTGTGGTGGAAAACGCTTATAAATTTCTACAAAAATAAATAGccgtttgaaaaaaaaaaaactgctcaGGGGACTCAActatcatctctcctcctccagccttCCATATCACCATTCCCTGGTTCCCTTGAACTTCTACTATCTTGCACTGAAGGTGGGTGCAGTATGTGTCTGCTGTGTGGTTGACTCAATGGACAGCAGGCGCCTtccagtattttgtttttttagcAGGTGTAGAAAGTAATCAGTGCAGTATTATGCTATCAGGTTTCAGTGCAGTATGCTGTGGCCACACTGGCTGATGGATTCAGTGCGTTCTCTTTCTGGGGATCTAGATATCTAAACCTGGACAGTGAAGACACAGTGGCAGCAGTACGTTCCAGTTTTGCGATGATAATGATTCCGGGCTAGAGATGATATTTATTCATTCGTTCCACAATGATGACTATTCCAGTTCTGTAATGATTCCTCTCGTTGATTGATGAATTTGGTGATGACTGATTCAGTGACGATTCTGATGACTGTTATTCCTGTTGGGTTATGATTTCTCTTGCAGCACTGTATTTAGTCCAGTTGGGTTATTGTGGTGACTGTGATGTTTCATTCTTTTTCCGCGATTATAACATGGCTATTCCTGCGATGTTAGTATTCGTCCGACTCTCCCGGTCCATTTTGTTGCATGTGGAGTGCGGTGGAGCGCGGTACCAAAGGTGAATGGATGTGGCGGCAGGGGAGCTGTGCTGACTCGCTGTCCCAAAACGAACGCCAGCTGCTGGACTGTGAGGCGGTTCTACTCATCCTTCTCTACTATGATCTCCCCAAGAAGCACCTTTCTCCTCTGACGGAGCATGTGGAAGTAGAGCTGTGGGaacactaggagagagagagagagagacgaggggagaggagagaagagagcgagagctatTTACCCACCAATCTAAACACTTATCCAGTCCAGATCAATATTTTAACAAAGAGCCTTCAGGGAAGTTCTCAGGGCTGGGATAGAGGTGAGTATTGGGTCTAGATCTAGTATGCAACTAGC

Function

NR:

description
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1458692 True 1806 lncRNA 0.42 2 28701203 28703108

Neighbor

gene id symbol gene type direction distance location
LOC100136716 LOC106590136 coding upstream 2247 28637747 ~ 28698956 (+)
LOC110489944 LOC106590138 coding upstream 89166 28580623 ~ 28612037 (+)
mettl4 mettl4 coding upstream 311674 28377804 ~ 28389529 (+)
LOC110489939 LOC106590143 coding upstream 384833 28281872 ~ 28316370 (+)
myom1b LOC106590144 coding upstream 419475 28246518 ~ 28281728 (+)
LOC110490831 LOC106590071 coding downstream 27968 28731076 ~ 28741476 (+)
LOC110489948 mrc1 coding downstream 53680 28756788 ~ 28777089 (+)
LOC110489949 mrc1 coding downstream 91972 28795080 ~ 28812062 (+)
LOC110489950 LOC106590132 coding downstream 123472 28826580 ~ 28837296 (+)
cacnb2a cacb2 coding downstream 148053 28851161 ~ 28963361 (+)
G1277178 clul1 non-coding upstream 70038 28626587 ~ 28631165 (+)
G1277177 NA non-coding upstream 74871 28625505 ~ 28626332 (+)
G1277174 clul1 non-coding upstream 80494 28619969 ~ 28620709 (+)
G1277128 NA non-coding upstream 84522 28614402 ~ 28616681 (+)
G1277145 NA non-coding upstream 156218 28544680 ~ 28544985 (+)
G1277276 NA non-coding downstream 109067 28812175 ~ 28812749 (+)
G1277277 NA non-coding downstream 110075 28813183 ~ 28813383 (+)
G1277281 NA non-coding downstream 115609 28818717 ~ 28819012 (+)
G1277283 NA non-coding downstream 118815 28821923 ~ 28822261 (+)
G1277284 NA non-coding downstream 119259 28822367 ~ 28822601 (+)
G1277159 NA other upstream 76985 28574316 ~ 28624218 (+)
G1276733 NA other upstream 444797 28190186 ~ 28256406 (+)
G1276288 NA other upstream 847190 27853618 ~ 27854013 (+)
G1275572 NA other upstream 1599176 27101309 ~ 27102027 (+)
kif9 kif9 other upstream 1738977 26960749 ~ 26974049 (+)
G1277279 NA other downstream 112258 28815366 ~ 28815810 (+)
G1279349 NA other downstream 1599925 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1692759 30395817 ~ 30416375 (+)
G1279833 NA other downstream 2241063 30944171 ~ 30947330 (+)
G1281462 NA other downstream 3293059 31996167 ~ 31996513 (+)

Expression


Co-expression Network