XLOC_031869 (sucla2)


Basic Information

Item Value
gene id XLOC_031869
gene name sucla2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 10037252 ~ 10056640 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062413
GTTTTTCTGCAGCGCTGCTTCAGCACAGAGCAACATGGCGACGTCCCTGATCTGTGGCCGGTTGTCCGCTGGACTGAGGAATTCCAGCTCCAGGACGACTGTAAGCTCGGCAGCTAAGGTGCTTGGTGGGACATCAGGTCTGTTTGGGCACCATGGAAACCAGCCATCTCCAATGCTGTCGCTGCAGCAGCAGAGAAAGCTCTCCCTGCATGAGTACATGAGCATCGGCCTGCTAAAGGAGGCGGGCATCTCTGTGCCCGCGGGGATGGTCGCCAGCACACCTGATGAGGCTTATACTGCTGCCAAGCAAATCGGTTCTAAAGACTTGGTTATAAAAGCCCAAGTGCTGGCGGGTGGTCGAGGCAAAGGCACTTTTGAAGGAGGACTGAAAGGAGGAGTCAGAATCGTTTACTCGCCAGAAGAAGCGAGGGATATCTCATCTAAGATGATTGGCAAGAAGCTTTTCACCAAGCAGACAGGAGAAGCAGGACGCATTTGCAATCAAGTGTTTGTCTGTGAGCGCAGATACCCACGCAGAGAGTATTACTTCGCCATCACTATGGAGAGGTCTTACCAGGGCCCCGTTCTGATTGGCAGTTCTCAGGGGGGTGTGAACATTGAGGATGTGGCTGCAGAGAATCCTGATGCCATTGTCAAAGAGCCTATTGATATTGTAGAGGGAATTAAGATGGATCAAGCCATTAAGGTGGCAGAGAAGATGGGATTTCCCCCTGCATTGATCAATGAAGCTGCGGAAAACATGTTGAAACTTTATGATGTGTTCATTAAGTATGATGCATCTATGGTGGAGATCAACCCAATGGTGGAGGATTCTTCTGGAATTGTGATGTGTATGGATGCTAAGATCAACTTTGATTCAAACGCTGCCTATAGACAGAAGAAAGTGTTCGACATGCGAGACTGGTCCCAGGAGGATGCCAGAGACAGACAAGCAGCCAAAGCAGACCTCAATTACATTGGCCTAGATGGCACTATCGGCTGCCTGGTTAATGGGGCTGGACTCGCTATGGCCACCATGGACATTATTAAACTGCATGGAGGAACACCTGCAAACTTTTTGGATGTTGGGGGTGGAGCCACAGCTCAGCAGGTGACAGAGGCCTTCAAGCTCATCACCTCTGATAAGAAGGTTCAAGCTATTTTGGTAAACATCTTTGGTGGCATCATGCGATGTGATGTCATTGCACAGGGCATTATCATGGCTGTCACGGACCTAGACCTGAAAATCCCTATTGTAGTGCGGTTACAAGGAACACGAGTGGACGATGCCAAGGCTCTGATCGCTGCCAGCCCTCTGAAGATCCTGGCCTGTGATGATCTGGACGAGGCTGCCAAAATGGTTGTTAAGCTTTCTGAAATTGTATCATTGGCCAAAGAGGCCCAGGTTGACGTCAAGTTCCAGCTGCCCATCTAACAGAACAATCCCAGAAGCCACATCACTTCTCAAAACCCCTTTCTCTACTACGAACTCAATCTAAGCCCACCACCTGAGCTTGCCCGTGTCCATCTCCAGCTTCCGTTAGCTCTCGTATCTGTCTCTCTGTGCTTCCCCAATCCTTCTGTTTCACCAGAGCTTTCATCAACATGTGTTTCAGCATGGAGCCGTTGTCATTTCACGTGATCGATTCCTCATTTATGAAATCACATCACTAACATAGAGGTTTTTTTTGCTTTAGATCGGGTCAGTGTTACTGCCTACTGTTGCTTGTTTTTGTCGTTGTTATTGTTTGTTCGGTTTCTCAAGTGGAGGGACTGTATTTATACTGTCGAAATGTACATGGAGATCCCACTCTCTGGATATAGAATGTCTCTCTGACACACTGGTACTCTTTATGCCtcatatagatatatatacacacatacacacgataTCATTAAACGCAAACCCCTCAGCTTTTCCTGTTTTCAGGCTGGAGCGAGTGTCTTCTCTGTTTTCTCCTGAAGAGACCTGCACCATTTCCTTTATCTTTAAATCAAACGCACAAGCACTCATGGGGAATGTGTGTGTTATCAGTGTTCTCTCAGGCTGACGTGAAGCCACCGGATGcggaaaacaataaaaataccaACACCTCTCATGCTTGATCCTA
>TCONS_00062414
CCCTGATCTGTGGCCGGTTGTCCGCTGGACTGAGGAATTCCAGCTCCAGGACGACTGTAAGCTCGGCAGCTAAGGTGCTTGGTGGGACATCAGGTCTGTTTGGGCACCATGGAAACCAGCCATCTCCAATGCTGTCGCTGCAGCAGCAGAGAAAGCTCTCCCTGCATGAGTACATGAGCATCGGCCTGCTAAAGGAGGCGGGCATCTCTGTGCCCGCGGGGATGGTCGCCAGCACACCTGATGAGGCTTATACTGCTGCCAAGCAAATCGGTTCTAAAGACTTGGTTATAAAAGCCCAAGTGCTGGCGGGTGGTCGAGGCAAAGGCACTTTTGAAGGAGGACTGAAAGGAGGAGTCAGAATCGTTTACTCGCCAGAAGAAGCGAGGGATATCTCATCTAAGATGATTGGCAAGAAGCTTTTCACCAAGCAGACAGGAGAAGCAGGACGCATTTGCAATCAAGTGTTTGTCTGTGAGCGCAGATACCCACGCAGAGAGTATTACTTCGCCATCACTATGGAGAGGTCTTACCAGGTGGCAGAGAAGATGGGATTTCCCCCTGCATTGATCAATGAAGCTGCGGAAAACATGTTGAAACTTTATGATGTGTTCATTAAGTATGATGCATCTATGGTGGAGATCAACCCAATGGTGGAGGATTCTTCTGGAATTGTGATGTGTATGGATGCTAAGATCAACTTTGATTCAAACGCTGCCTAT

Function

symbol description
sucla2 Predicted to enable succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in succinyl-CoA metabolic process and tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex. Predicted to be active in mitochondrion. Is expressed in several structures, including axis; hatching gland; mesoderm; musculature system; and solid lens vesicle. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 5. Orthologous to human SUCLA2 (succinate-CoA ligase ADP-forming subunit beta).

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006104 succinyl-CoA metabolic process biological_process
GO:0042709 succinate-CoA ligase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004775 succinate-CoA ligase (ADP-forming) activity molecular_function
GO:0004776 succinate-CoA ligase (GDP-forming) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1963 Predicted to enable succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in succinyl-CoA metabolic process and tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex. Predicted to be active in mitochondrion. Is expressed in several structures, including axis; hatching gland; mesoderm; musculature system; and solid lens vesicle. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 5. Orthologous to human SUCLA2 (succinate-CoA ligase ADP-forming subunit beta).

Ensembl:

ensembl_id ENSDARG00000005359

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062413 False 2111 mRNA 0.48 11 10037252 10056640
TCONS_00062414 True 719 mRNA 0.50 6 10037296 10048001

Neighbor

gene id symbol gene type direction distance location
XLOC_031868 NA coding upstream 283 10024650 ~ 10036969 (+)
XLOC_031867 NA coding upstream 24230 10012261 ~ 10013022 (+)
XLOC_031866 abi2b coding upstream 26904 9970733 ~ 10010348 (+)
XLOC_031865 cyp20a1 coding upstream 67794 9952678 ~ 9969458 (+)
XLOC_031864 tmem237b coding upstream 120718 9898683 ~ 9916534 (+)
XLOC_031870 htr2ab coding downstream 21116 10077756 ~ 10088463 (+)
XLOC_031871 atp7b coding downstream 37421 10094061 ~ 10132102 (+)
XLOC_031872 NA coding downstream 119217 10175857 ~ 10184750 (+)
XLOC_031873 cobll1a coding downstream 277280 10333920 ~ 10365603 (+)
XLOC_031874 NA coding downstream 320383 10377023 ~ 10398536 (+)
XLOC_031858 NA non-coding upstream 370654 9651251 ~ 9666598 (+)
XLOC_031857 NA non-coding upstream 497960 9537670 ~ 9539292 (+)
XLOC_031851 NA non-coding upstream 864146 9163007 ~ 9173106 (+)
XLOC_031875 NA non-coding downstream 375111 10431751 ~ 10432077 (+)
XLOC_031877 BX005368.1 non-coding downstream 479692 10536332 ~ 10536695 (+)
XLOC_031878 BX936397.1 non-coding downstream 635300 10691940 ~ 10693423 (+)

Expression


Co-expression Network