G1277993 (LOC100136012)


Basic Information

Item Value
gene id G1277993
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 29297563 ~ 29310123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1459565
attaactgcacctgtttgaactcgtttcctgtataaaagacacctgtccacacactcaatcaaacagactccaacctctccacaatggccaagaccagagagctgtgtaaggacatcagggatataattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaagtgttggcgcaattattagaaaaagttcaagatgacggttaatcaccctcggtctggggctccatgcaagatctcacctcgtggggcatcaatgaccatgaggaaggtgagggatcagcccagaa
>TU1459567
attaactgcacctgtttgaactcgtttcctgtataaaagacacctgtccacacactcaatcaaacagactccaacctctccacaatggccaagaccagagagctgtgtaaggacatcagggatataattgtagaccttcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaagaagttcaagatgacggttaatcaccctcggtctggggctccatgcaagatctcacctcgtggggcatcaatgaccatgaggaaggtgagggatcagcccagaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1459565 False 321 lncRNA 0.48 2 29297563 29310123
TU1459567 True 328 lncRNA 0.48 2 29297563 29310123

Neighbor

gene id symbol gene type direction distance location
malrd1 malrd1 coding upstream 116361 29070354 ~ 29181202 (+)
arl8 LOC106590131 coding upstream 301241 28983479 ~ 28996322 (+)
cacnb2a cacb2 coding upstream 334202 28851161 ~ 28963361 (+)
LOC110489950 LOC106590132 coding upstream 460267 28826580 ~ 28837296 (+)
LOC110489949 mrc1 coding upstream 485501 28795080 ~ 28812062 (+)
zfand1 zfand1 coding downstream 95173 29405296 ~ 29415105 (+)
prlh2 crfa coding downstream 112271 29422394 ~ 29426818 (+)
si:dkey-12l12.1 LOC106590121 coding downstream 294532 29604542 ~ 29632819 (+)
LOC110489961 LOC106590122 coding downstream 302508 29612631 ~ 29614518 (+)
ackr4b LOC106590119 coding downstream 347845 29657968 ~ 29664921 (+)
G1277920 NA non-coding upstream 101480 29195825 ~ 29196083 (+)
G1277917 NA non-coding upstream 103034 29194320 ~ 29194529 (+)
G1277793 NA non-coding upstream 158251 29138385 ~ 29139312 (+)
G1277761 NA non-coding upstream 211385 29085393 ~ 29086178 (+)
G1277751 NA non-coding upstream 231064 29066275 ~ 29066499 (+)
plxdc2 LOC106578707 non-coding downstream 71293 29207260 ~ 29383520 (+)
G1278114 NA non-coding downstream 195978 29506101 ~ 29506490 (+)
G1278115 NA non-coding downstream 196529 29506652 ~ 29506857 (+)
G1278128 NA non-coding downstream 214353 29524476 ~ 29524795 (+)
G1278129 NA non-coding downstream 215293 29525416 ~ 29525728 (+)
G1277279 NA other upstream 481753 28815366 ~ 28815810 (+)
G1277159 NA other upstream 673345 28574316 ~ 28624218 (+)
G1276733 NA other upstream 1041157 28190186 ~ 28256406 (+)
G1276288 NA other upstream 1443550 27853618 ~ 27854013 (+)
G1275572 NA other upstream 2195536 27101309 ~ 27102027 (+)
G1279349 NA other downstream 992910 30303033 ~ 30303419 (+)
htr5ab htr5a other downstream 1085744 30395817 ~ 30416375 (+)
G1279833 NA other downstream 1634048 30944171 ~ 30947330 (+)
G1281462 NA other downstream 2686044 31996167 ~ 31996513 (+)
G1282302 NA other downstream 3377435 32687558 ~ 32698036 (+)

Expression


Co-expression Network