G1278188


Basic Information

Item Value
gene id G1278188
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 29622195 ~ 29622673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1459772
gagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagcttaaagatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaacttttagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcctatgtataagtatattgcacaaatctggcctttatggaagattggcaagaagaaagccatttcttaaagatatccataaaaagggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1459772 True 479 lncRNA 0.41 1 29622195 29622673

Neighbor

gene id symbol gene type direction distance location
LOC110489961 LOC106590122 coding upstream 7677 29612631 ~ 29614518 (+)
prlh2 crfa coding upstream 195377 29422394 ~ 29426818 (+)
zfand1 zfand1 coding upstream 207090 29405296 ~ 29415105 (+)
plxdc2 LOC106578707 coding upstream 238675 29207260 ~ 29383520 (+)
malrd1 malrd1 coding upstream 440993 29070354 ~ 29181202 (+)
ackr4b LOC106590119 coding downstream 35295 29657968 ~ 29664921 (+)
LOC110489968 LOC106590118 coding downstream 67044 29689717 ~ 29695951 (+)
tgif1 LOC106590112 coding downstream 347271 29969944 ~ 29976086 (+)
LOC110489977 LOC106590110 coding downstream 707137 30329810 ~ 30345566 (+)
htr5ab htr5a coding downstream 773144 30395817 ~ 30416375 (+)
G1278187 NA non-coding upstream 1383 29620489 ~ 29620812 (+)
G1278186 NA non-coding upstream 2495 29619481 ~ 29619700 (+)
G1278185 NA non-coding upstream 3943 29618014 ~ 29618252 (+)
G1278183 NA non-coding upstream 10342 29611652 ~ 29611853 (+)
G1278182 NA non-coding upstream 10678 29611295 ~ 29611517 (+)
G1278201 NA non-coding downstream 22127 29644800 ~ 29645041 (+)
G1278205 NA non-coding downstream 27660 29650333 ~ 29650568 (+)
G1278229 NA non-coding downstream 60931 29683604 ~ 29684155 (+)
G1278230 NA non-coding downstream 62601 29685274 ~ 29685579 (+)
G1278231 NA non-coding downstream 64548 29687221 ~ 29687582 (+)
G1277279 NA other upstream 806385 28815366 ~ 28815810 (+)
G1277159 NA other upstream 997977 28574316 ~ 28624218 (+)
G1276733 NA other upstream 1365789 28190186 ~ 28256406 (+)
G1276288 NA other upstream 1768182 27853618 ~ 27854013 (+)
G1275572 NA other upstream 2520168 27101309 ~ 27102027 (+)
G1279349 NA other downstream 680360 30303033 ~ 30303419 (+)
G1279833 NA other downstream 1321498 30944171 ~ 30947330 (+)
G1281462 NA other downstream 2373494 31996167 ~ 31996513 (+)
G1282302 NA other downstream 3064885 32687558 ~ 32698036 (+)

Expression


Co-expression Network