G1278396


Basic Information

Item Value
gene id G1278396
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 29932479 ~ 29932708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1459983
tctgcagcattgaaggtccccaagaacacagtgacctccatcattcttaaatggaaaaagtttggaaccaaccaggctcttcctagagctggccacccaggccaaactgagcaaatggtggagaagggccttggtcagggaagtgaccaagaagcCGATGGTCACTCTTAAAGacctctagagttcctctgtggagatgggagaaccttccagaaggacaaccatttctg

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1459983 True 230 lncRNA 0.50 1 29932479 29932708

Neighbor

gene id symbol gene type direction distance location
LOC110489968 LOC106590118 coding upstream 236528 29689717 ~ 29695951 (+)
ackr4b LOC106590119 coding upstream 267558 29657968 ~ 29664921 (+)
si:dkey-12l12.1 LOC106590121 coding upstream 299660 29604542 ~ 29632819 (+)
LOC110489961 LOC106590122 coding upstream 317961 29612631 ~ 29614518 (+)
prlh2 crfa coding upstream 505661 29422394 ~ 29426818 (+)
tgif1 LOC106590112 coding downstream 37236 29969944 ~ 29976086 (+)
LOC110489977 LOC106590110 coding downstream 397102 30329810 ~ 30345566 (+)
htr5ab htr5a coding downstream 463109 30395817 ~ 30416375 (+)
insig1 insig1 coding downstream 549309 30482017 ~ 30496207 (+)
en2a en2 coding downstream 585288 30517996 ~ 30521339 (+)
G1278389 NA non-coding upstream 6035 29926171 ~ 29926444 (+)
G1278369 NA non-coding upstream 24293 29907958 ~ 29908186 (+)
G1278365 NA non-coding upstream 34982 29897134 ~ 29897497 (+)
G1278363 NA non-coding upstream 37743 29894488 ~ 29894736 (+)
G1278351 NA non-coding upstream 56159 29875973 ~ 29876320 (+)
G1278372 NA non-coding downstream 6388 29939096 ~ 29981295 (+)
G1278401 LOC106590113 non-coding downstream 16050 29948758 ~ 29965665 (+)
G1278371 NA non-coding downstream 44623 29977331 ~ 29979103 (+)
G1278468 NA non-coding downstream 123793 30056501 ~ 30069993 (+)
G1278471 NA non-coding downstream 126843 30059551 ~ 30059969 (+)
G1277279 NA other upstream 1116669 28815366 ~ 28815810 (+)
G1277159 NA other upstream 1308261 28574316 ~ 28624218 (+)
G1276733 NA other upstream 1676073 28190186 ~ 28256406 (+)
G1276288 NA other upstream 2078466 27853618 ~ 27854013 (+)
G1275572 NA other upstream 2830452 27101309 ~ 27102027 (+)
G1279349 NA other downstream 370325 30303033 ~ 30303419 (+)
G1279833 NA other downstream 1011463 30944171 ~ 30947330 (+)
G1281462 NA other downstream 2063459 31996167 ~ 31996513 (+)
G1282302 NA other downstream 2754850 32687558 ~ 32698036 (+)

Expression


Co-expression Network