G1278401 (LOC106590113)


Basic Information

Item Value
gene id G1278401
gene name LOC106590113
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 29948758 ~ 29965665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1459990
gagagagagagagagagagagagagagagagagagagagagagagagagagagagaccgtatgAGCTCAGGGTGAGTCGTGAGCTGGGCTGTGAGGAGATGTCCTTAGCACAGGGGCCAACAGGGGCCCCAGGTGCTGACTGAGGCCCTCTCAGACCTCAGATGACAGAGGCTCCACTACTATCAGCAGAGATGATTGGCCCATTTTGTAACAGCTAGCCTACTGTAACACACAGTAATATTTAAACGCAGCAATCGGATAACTATTGGTTTCAAATGTGACCATTTTGTTCAATGTACATTTTAGACAGTGACGCTGCCATCGACTTGGCCAGCTCTTCGTCCCGTTTCCTTTGCATCTGAGAATGACGGAACCAGTCGTCATACTCTGGGTTGTCCACACACCTGTCCAGCAGGACATCATAGTGTCCGTTACTGAGCCAACTCAACCAGACAGTGGGTTTGGACGAGTCCTCTTCCCCCAGGTAGTGCACCATGGTTGAAATCGTGGGACTCTCCAAGCTACCTCCAGTGGTCAGGTAAATGTTCACATTCAACATCTGACTCATCGCCAGAAGCTCCGGATAGCCTGCCCAGGCACTGTCCTGCGCTGCGTTGATCAGGAACTCGCCGACATCCCCCTCAATGATGGGGTTAAACTCATCCAGGTGGTCGGCTATGTGGTGCATTGTCTGGTCTCTCAGCTCCTTGTGCATAGACTGCTCTCCATAGGCGGCTTTGCACACCGCCCTGTACAGACAATTGCCGTCAGGGATGATGTGGAATCTGTACTTGTGTACCTTCTCCTGAAGGTATTTGTTCTGTTTCTCCACTTCCGCAATGTAACGCGTCACTTTGTCTTCCTCAcatttctctgcttctctccgtggagagggagggggctcCTGTAGGACATTGAGCTCAAAGAGCTGTGCCTCGCCAGATGGAAAGTCCAGGTCTGCACATTCACTATCATTTCTATTCTCACAGGAATCCAAGATGCCTCGGCCCAAATGGGTTGCCAGGGCCTCCAAGTTCTGATGGGGTTTTTGGCTAACAATGTCACTCTAACAGTTTTTCCTTCCCCATTTGCCATGTTCATTCTCTCCTCACACTTTCTGTAACTTGGTCCATCTTTCTTGTCAAAATTGATCAGGTTATTTTCACGTTCAACCTTTTGACTATCACTGAAAAAATCCCCTCTACCTCTGAGGTGATCAATGAAGTCCACAATCAAGTCTCTATCCAAATGATCCTCTCGGTCACGTGGCTGAATCAGGATATCTTGTGAATATGAGTCTGATGGAGACCGTTTGGTTTGGGCTTCCTTTAGGATGTGCACTGGTACGGATCTCTCAGCTCCGTCGGGCCGACGAATAATTATCTCTGCGGTTGAAGTGTAGTAGACTGGCTTCATGGAAGCAGCCTCGTAACATGAAAAACAAGCAGCAGGCATGTTTGCAGTAGATTGAGTCTCTCCTAAAGTATTCCCGTTAGTGTCTGCTGGAGTAGGCCCACTCGGTTTATTATTCACAGAGGAGCTCGTTGTTGTTCTGGACAAATGGTCGGTAGTGGTACCACTTGCGATAGTTATCGAAGCTTTGCGAGAGGATCCGGGATAGTGTGTCAAC

Function

NR:

description
OTU domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1459990 True 1630 lncRNA 0.49 2 29948758 29965665

Neighbor

gene id symbol gene type direction distance location
LOC110489968 LOC106590118 coding upstream 252807 29689717 ~ 29695951 (+)
ackr4b LOC106590119 coding upstream 283837 29657968 ~ 29664921 (+)
si:dkey-12l12.1 LOC106590121 coding upstream 315939 29604542 ~ 29632819 (+)
LOC110489961 LOC106590122 coding upstream 334240 29612631 ~ 29614518 (+)
prlh2 crfa coding upstream 521940 29422394 ~ 29426818 (+)
tgif1 LOC106590112 coding downstream 4279 29969944 ~ 29976086 (+)
LOC110489977 LOC106590110 coding downstream 364145 30329810 ~ 30345566 (+)
htr5ab htr5a coding downstream 430152 30395817 ~ 30416375 (+)
insig1 insig1 coding downstream 516352 30482017 ~ 30496207 (+)
en2a en2 coding downstream 552331 30517996 ~ 30521339 (+)
G1278396 NA non-coding upstream 16050 29932479 ~ 29932708 (+)
G1278389 NA non-coding upstream 22314 29926171 ~ 29926444 (+)
G1278369 NA non-coding upstream 40572 29907958 ~ 29908186 (+)
G1278365 NA non-coding upstream 51261 29897134 ~ 29897497 (+)
G1278363 NA non-coding upstream 54022 29894488 ~ 29894736 (+)
G1278371 NA non-coding downstream 11666 29977331 ~ 29979103 (+)
G1278468 NA non-coding downstream 90836 30056501 ~ 30069993 (+)
G1278471 NA non-coding downstream 93886 30059551 ~ 30059969 (+)
G1278514 NA non-coding downstream 146654 30112319 ~ 30114236 (+)
G1279348 NA non-coding downstream 337007 30302672 ~ 30302880 (+)
G1277279 NA other upstream 1132948 28815366 ~ 28815810 (+)
G1277159 NA other upstream 1324540 28574316 ~ 28624218 (+)
G1276733 NA other upstream 1692352 28190186 ~ 28256406 (+)
G1276288 NA other upstream 2094745 27853618 ~ 27854013 (+)
G1275572 NA other upstream 2846731 27101309 ~ 27102027 (+)
G1279349 NA other downstream 337368 30303033 ~ 30303419 (+)
G1279833 NA other downstream 978506 30944171 ~ 30947330 (+)
G1281462 NA other downstream 2030502 31996167 ~ 31996513 (+)
G1282302 NA other downstream 2721893 32687558 ~ 32698036 (+)

Expression


Co-expression Network