G1278468


Basic Information

Item Value
gene id G1278468
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30056501 ~ 30069993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1460060
ACTGCCTCCacggatatattattgaatacaTATGTTAAAAGCActttgaggatggatcctaaacaacgtttgccgtgtttctgtcgatattatggagcaaattttgaaaaaagtttgccgttatagttgaagtattttcggtcgatttctcagccaagcaggaTGAACAAACGTGACGTTTTTCGcctccaaaaatattatttttggaataaaggaacatttgctatctaactgggagtctcctgaatGAAAGCATTTGAAGTTCTTCagagatgtctctttcatTAAATGGCGGGAGGGCAGTGCACTGTATGGATGCTGGAATTGTTTCGGAGTGGACCAACATGTGCAGGTAttgaatttaatttattttgcgCAACAGACACATATACAGCAAATGTGGACCCAGAGTATATCACTTGAAAGTATTCATCAAAACGCTCGTTTCCAAAGTGGTCCTCGAtggtaaaaacaataacacaagaCATAAATACATTCATTTATATTGACGTCCTAAAAAGTGGCACTATTCACTGCACTTCACCCTAACCTTAAATCAACCATATTAATTTCACATTAAAAcaatctattattattattattattattattgcacaACATACCGATCCTTCAAATAAATACACCGGACCAGCAGTAGGGGGCACAAGGGTCAGTGGAGTGGTTTCCCTTACTTAGACAACCTTGTCCCAATGAAAAACTTTGCCTGCTTTTTAAAGCTATTTTTGCTTTTTATTTGCTCGATCTCCAAGGGAAGGCTATTCCATAGACGAATGCCTGTATGGAAAAACGTGCTCCTCGCAGTACTGTTTACTCTTGGGATTTTACAAGACAGCTCTGTTATTGTGACTGTGTTGGTTATAGACCATATCAATGCGTTTTTTCATGTAACCTGGGGCACGATCATTTAAGATGTCAAACACGTGATTAAGTTTAAGTTGGTCCACTCTGGACTCCAAAGGCAACAAGCCCACCTCCCGGAACTCCTGTACCCCTATGTGAGTCCTTGGGGGGACATTCAGCatatacctgataacattattttgCATGACCTGCAATCTCTTTTTCAGCTTTTTTGATAGCCCGCTATACCAAGCAGAGCAGGCATAATCAAAATGACACTGAATCAAGGTTCAGACAAGCAGTTTCAAGAAGGTAGCTTCCTtcttgaagtgatttgtttgacaatcagatgaaaacatcatgacggattgtgttcatgccacattaaaaggtaatGCACTTTTTACCGTTAAATGACTTGTCTTTACTATTAGGCCCATAAAGAATGCGTACCCACATAGGAAGTCCCGTGAAAAAACTAAGACTCACGAATGTCAAGGTGTAATTCGCATTCCGCTTATAAACATTGTCCGGTTATGTAATGTGACAAAGTAGCTCTCTGATGCAAGAACAGGCAGTCACCATTTTAGTACAGCAAAGGGCTATTGACTAATTCAAGGCCACAGGAATCCCATGGTAGTTCAATATAAAATCAGGAAGCAGACGCTCTCATTGAAACAGGGTAGGAGAAaaatatgtgtcccaaatggcaccctattccctatatagtgccctacttttaaccagggccctggATACACGGTGGCAGATTTCCCTAGCTTTAGATCTGCATGCAGAAGTGGCTTTAATTGAAGGTCACCTCACAGTGAAGGAATAGCTGATTTTACGCCTCTCATTACTGCAAAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1460060 True 1729 lncRNA 0.40 2 30056501 30069993

Neighbor

gene id symbol gene type direction distance location
tgif1 LOC106590112 coding upstream 80415 29969944 ~ 29976086 (+)
LOC110489968 LOC106590118 coding upstream 360550 29689717 ~ 29695951 (+)
ackr4b LOC106590119 coding upstream 391580 29657968 ~ 29664921 (+)
si:dkey-12l12.1 LOC106590121 coding upstream 423682 29604542 ~ 29632819 (+)
LOC110489977 LOC106590110 coding downstream 259817 30329810 ~ 30345566 (+)
htr5ab htr5a coding downstream 325824 30395817 ~ 30416375 (+)
insig1 insig1 coding downstream 412024 30482017 ~ 30496207 (+)
en2a en2 coding downstream 448003 30517996 ~ 30521339 (+)
LOC118938958 NA coding downstream 463103 30533096 ~ 30533257 (+)
G1278372 NA non-coding upstream 75206 29939096 ~ 29981295 (+)
G1278371 NA non-coding upstream 77398 29977331 ~ 29979103 (+)
G1278401 LOC106590113 non-coding upstream 90836 29948758 ~ 29965665 (+)
G1278396 NA non-coding upstream 123793 29932479 ~ 29932708 (+)
G1278389 NA non-coding upstream 130057 29926171 ~ 29926444 (+)
G1278514 NA non-coding downstream 42326 30112319 ~ 30114236 (+)
G1279348 NA non-coding downstream 232679 30302672 ~ 30302880 (+)
G1279379 NA non-coding downstream 280499 30350492 ~ 30352896 (+)
G1279395 NA non-coding downstream 304034 30374027 ~ 30374269 (+)
G1279404 NA non-coding downstream 316884 30386877 ~ 30387089 (+)
G1277279 NA other upstream 1240691 28815366 ~ 28815810 (+)
G1277159 NA other upstream 1432283 28574316 ~ 28624218 (+)
G1276733 NA other upstream 1800095 28190186 ~ 28256406 (+)
G1276288 NA other upstream 2202488 27853618 ~ 27854013 (+)
G1275572 NA other upstream 2954474 27101309 ~ 27102027 (+)
G1279349 NA other downstream 233040 30303033 ~ 30303419 (+)
G1279833 NA other downstream 874178 30944171 ~ 30947330 (+)
G1281462 NA other downstream 1926174 31996167 ~ 31996513 (+)
G1282302 NA other downstream 2617565 32687558 ~ 32698036 (+)

Expression


Co-expression Network