XLOC_003188 (gtpbp3)


Basic Information

Item Value
gene id XLOC_003188
gene name gtpbp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6009984 ~ 6037759 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006278
CAGTAGGGGTGGCTCTTTCGAACCACACGAACACCCTTGTGTTAGTACTACACGGGCAGAGTTGAAGGACGCACAAGAGGAGCGATTTACTTGATTGACAGTTAAGCTGGCGAATCACAGGCCAATTTGCGCGGACGTCGGACGACGCGGACCAATGAAATTAGCCTAAAAGGGGTCACAACAAACCACCTACAACATTTCTTTTTAAACTCACGTGGAGCGCTCGTTACTCCCAACGGCTTTATAATAAGCGTTTAACAATGATTTGTACAATAAACCTGTACATCATTCCATAGAGCCCATTACCATGCATTTTATAAGTTGTTGTTTGAGGAGAAGTACTGTCTCAATTGCTGTCTCAAGGTCTTTTTCCATTCATAAGCACTTAGCTTTCGGTTACAGTAATAGCTACATCATACATGACTGCTTCTTTCTTTGGCAGGTCTCTTTTAGTGAAAAGGCTGTTTTGTTCTGGCTGGCCTGGGGATGACACTATCTACTCCTTGTCGTCGGGTCAGGGCAAGTGTGGGGTGGCGGTGGTCCGGGTCAGCGGTCCGGCTTCAGCGCTCGCTGTTCGCCGTCTGACCCGAAGCCTCCCTGCGCCTCGAACTGCCAGCCTCCGCAGCATCAGCCACCCGCAGAGCAAAGAGCTGCTGGACCGCGGCCTGGTCCTATGGTTTCCAGGTCCCGCTAGTTTCACTGGAGAGGACAGTGCAGAATTCCACATTCACGGTGGTCCTGCTGTCATCAGCGGGGTCTTGCAGGCACTTGggagTTTGCCTGGCTTGCGGCCAGCAGAGGCAGGTGAGTTCACCCGACGGGCGTTTTACGCTGGAAAGTTGGATCTTACTGAAGTTGAAGGTCTTAGTGATCTGATCCATGCTGAGACAGAAGCACAGAGACGACAGGCGCTCCGGCAGATGGCAGGAGACCTGGGCCGCATCTACCAGGACTGGACAGATCAGCTTAAACGATGCTTGGCTCACGTGGAGGCATTCATCGACTTCAGTGAGGATGAACTCATAGAGGATGGAGTCTTGAATGACGTGGACAGAGCCGTTCAGCAGCTGCAGACGGACATGGAAAACCACCTCTCGGATGAGCGCAGAGGAGAGCGTCTGCGCAGCGGGGTTCATGTGGTCATCGCTGGAAGCACCAACGCTGGCAAAAGCAGCCTACTCAACCTGCTCACCCAACGTCCTGCAGCCATAGTGTCTCCTACAGCCGGGACCACCAGAGATGTACTGGAGGTCCCTCTGGACATCGGGGGCTATCCTGTGCTGCTGAGTGATACAGCAGGACTACGGGACACCAGTGACAGTGTGGAACAGGAGGGCGTCCGGCGCGCCCGGCAGCGGGTGGAGCAGGCGGATCTGTCTCTGGTGGTTGTGGACTTGACGCAGCTTCCTTCTGAGCGCCGGCATGTGCCCGTTTTCCTCAGAGGACACTTGAAGAATATCCTGGAGCGCTCctctcagcagcagcagcacatcCTGATCCTTAACAAAAGTGACCTGGTCTCTGCTGAACAGCAGCGCAGCATCCAGACGTCCCTTCAGGAGCTCTCTGATGCTCCTTCTGCATGCTTTCTGTCCTGCCACAGCAGAGATGGCCTGGAGGAGCTCCTGACTCTATTGCATAACACTCTGAAGACCCTGTGTGGTGACCCGCTGATAGGCAGCCCGACTCTGACTCAGACTCGACACCGGACTCACCTGCAGAAGAGCATTGAGGCTTTACAGCAGTATCATGAGTACAGGGATGTGGACCTGGCGCTGGCGGCTGAAGGCCTTCGTTTGGGGCTCTTGAGCCTGGGCAGGATCACTGGTAGAGTTAGTCCTGAGGAAATATTAGACGTCATTTTCAGAGACTTCTGTATTGGGAAGTAG
>TCONS_00006279
AACATTTCTTTTTAAACTCACGTGGAGCGCTCGTTACTCCCAACGGCTTTATAATAAGCGTTTAACAATGATTTGTACAATAAACCTGTACATCATTCCATAGAGCCCATTACCATGCATTTTATAAGTTGTTGTTTGAGGAGAAGTACTGTCTCAATTGCTGTCTCAAGGTCTCTTTTAGTGAAAAGGCTGTTTTGTTCTGGCTGGCCTGGGGATGACACTATCTACTCCTTGTCGTCGGGTCAGGGCAAGTGTGGGGTGGCGGTGGTCCGGGTCAGCGGTCCGGCTTCAGCGCTCGCTGTTCGCCGTCTGACCCGAAGCCTCCCTGCGCCTCGAACTGCCAGCCTCCGCAGCATCAGCCACCCGCAGAGCAAAGAGCTGCTGGACCGCGGCCTGGTCCTATGGTTTCCAGggagTTTGCCTGGCTTGCGGCCAGCAGAGGCAGGTGAGTTCACCCGACGGGCGTTTTACGCTGGAAAGTTGGATCTTACTGAAGTTGAAGGTCTTAGTGATCTGATCCATGCTGAGACAGAAGCACAGAGACGACAGGCGCTCCGGCAGATGGCAGGAGACCTGGGCCGCATCTACCAGGACTGGACAGATCAGCTTAAACGATGCTTGGCTCACGTGGAGGCATTCATCGACTTCAGTGAGGATGAACTCATAGAGGATGGAGTCTTGAATGACGTGGACAGAGCCGTTCAGCAGCTGCAGACGGACATGGAAAACCACCTCTCGGATGAGCGCAGAGGAGAGCGTCTGCGCAGCGGGGTTCATGTGGTCATCGCTGGAAGCACCAACGCTGGCAAAAGCAGCCTACTCAACCTGCTCACCCAACGTCCTGCAGCCATAGTGTCTCCTACAGCCGGGACCACCAGAGATGTACTGGAGGTCCCTCTGGACATCGGGGGCTATCCTGTGCTGCTGAGTGATACAGCAGGACTACGGGACACCAGTGACAGTGTGGAACAGGAGGGCGTCCGGCGCGCCCGGCAGCGGGTGGAGCAGGCGGATCTGTCTCTGGTGGTTGTGGACTTGACGCAGCTTCCTTCTGAGCGCCGGCATGTGCCCGTTTTCCTCAGAGGACACTTGAAGAATATCCTGGAGCGCTCctctcagcagcagcagcacatcCTGATCCTTAACAAAAGTGACCTGGTCTCTGCTGAACAGCAGCGCAGCATCCAGACGTCCCTTCAGGAGCTCTCTGATGCTCCTTCTGCATGCTTTCTGTCCTGCCACAGCAGAGATGGCCTGGAGGAGCTCCTGACTCTATTGCATAACACTCTGAAGACCCTGTGTGGTGACCCGCTGATAGGCAGCCCGACTCTGACTCAGACTCGACACCGGACTCACCTGCAGAAGAGCATTGAGGCTTTACAGCAGTATCATGAGTACAGGGATGTGGACCTGGCGCTGGCGGCTGAAGGCCTTCGTTTGGGGCTCTTGAGCCTGGGCAGGATCACTGGTAGAGTTAGTCCTGAGGAAATATTAGACGTCATTTTCAGAGACTTCTGTATTGGGAAGTAGAACAGTGTAAATGggtgtacatttttt
>TCONS_00006280
AACATTTCTTTTTAAACTCACGTGGAGCGCTCGTTACTCCCAACGGCTTTATAATAAGCGTTTAACAATGATTTGTACAATAAACCTGTACATCATTCCATAGAGCCCATTACCATGCATTTTATAAGTTGTTGTTTGAGGAGAAGTACTGTCTCAATTGCTGTCTCAAGGTCTCTTTTAGTGAAAAGGCTGTTTTGTTCTGGCTGGCCTGGGGATGACACTATCTACTCCTTGTCGTCGGGTCAGGGCAAGTGTGGGGTGGCGGTGGTCCGGGTCAGCGGTCCGGCTTCAGCGCTCGCTGTTCGCCGTCTGACCCGAAGCCTCCCTGCGCCTCGAACTGCCAGCCTCCGCAGCATCAGCCACCCGCAGAGCAAAGAGCTGCTGGACCGCGGCCTGGTCCTATGGTTTCCAGGTCCCGCTAGTTTCACTGGAGAGGACAGTGCAGAATTCCACATTCACGGTGGTCCTGCTGTCATCAGCGGGGTCTTGCAGGCACTTGggagTTTGCCTGGCTTGCGGCCAGCAGAGGCAGGTGAGTTCACCCGACGGGCGTTTTACGCTGGAAAGTTGGATCTTACTGAAGTTGAAGGTCTTAGTGATCTGATCCATGCTGAGACAGAAGCACAGAGACGACAGGCGCTCCGGCAGATGGCAGGAGACCTGGGCCGCATCTACCAGGACTGGACAGATCAGCTTAAACGATGCTTGGCTCACGTGGAGGCATTCATCGACTTCAGTGAGGATGAACTCATAGAGGATGGAGTCTTGAATGACGTGGACAGAGCCGTTCAGCAGCTGCAGACGGACATGGAAAACCACCTCTCGGATGAGCGCAGAGGAGAGCGTCTGCGCAGCGGGGTTCATGTGGTCATCGCTGGAAGCACCAACGCTGGCAAAAGCAGCCTACTCAACCTGCTCACCCAACGTCCTGCAGCCATAGTGTCTCCTACAGCCGGGACCACCAGAGATGTACTGGAGGTCCCTCTGGACATCGGGGGCTATCCTGTGCTGCTGAGTGATACAGCAGGACTACGGGACACCAGTGACAGTGTGGAACAGGAGGGCGTCCGGCGCGCCCGGCAGCGGGTGGAGCAGGCGGATCTGTCTCTGGTGGTTGTGGACTTGACGCAGCTTCCTTCTGAGCGCCGGCATGTGCCCGTTTTCCTCAGAGGACACTTGAAGAATATCCTGGAGCGCTCctctcagcagcagcagcacatcCTGATCCTTAACAAAAGTGACCTGGTCTCTGCTGAACAGCAGCGCAGCATCCAGACGTCCCTTCAGGAGCTCTCTGATGCTCCTTCTGCATGCTTTCTGTCCTGCCACAGCAGAGATGGCCTGGAGGAGCTCCTGACTCTATTGCATAACACTCTGAAGACCCTGTGTGGTGACCCGCTGATAGGCAGCCCGACTCTGACTCAGACTCGACACCGGACTCACCTGCAGAAGAGCATTGAGGCTTTACAGCAGTATCATGAGTACAGGGATGTGGACCTGGCGCTGGCGGCTGAAGGCCTTCGTTTGGGGCTCTTGAGCCTGGGCAGGATCACTGGTAGAGTTAGTCCTGAGGAAATATTAGACGTCATTTTCAGAGACTTCTGTATTGGGAAGTAGAACAGTGTAAATGggtgtacattttttaaataaaaatcagacACAAA
>TCONS_00006281
AACTCACGTGGAGCGCTCGTTACTCCCAACGGCTTTATAATAAGCGTTTAACAATGATTTGTACAATAAACCTGTACATCATTCCATAGAGCCCATTACCATGCATTTTATAAGTTGTTGTTTGAGGAGAAGTACTGTCTCAATTGCTGTCTCAAGGTCTCTTTTAGTGAAAAGGCTGTTTTGTTCTGGCTGGCCTGGGGATGACACTATCTACTCCTTGTCGTCGGGTCAGGGCAAGTGTGGGGTGGCGGTGGTCCGGGTCAGCGGTCCGGCTTCAGCGCTCGCTGTTCGCCGTCTGACCCGAAGCCTCCCTGCGCCTCGAACTGCCAGCCTCCGCAGCATCAGCCACCCGCAGAGCAAAGAGCTGCTGGACCGCGGCCTGGTCCTATGGTTTCCAGggagTTTGCCTGGCTTGCGGCCAGCAGAGGCAGGTGAGTTCACCCGACGGGCGTTTTACGCTGGAAAGTTGGATCTTACTGAAGTTGAAGGTCTTAGTGATCTGATCCATGCTGAGACAGAAGCACAGAGACGACAGGCGCTCCGGCAGATGGCAGGAGACCTGGGCCGCATCTACCAGGACTGGACAGATCAGCTTAAACGATGCTTGGCTCACGTGGAGGCATTCATCGACTTCAGTGAGGATGAACTCATAGAGGATGGAGTCTTGAATGACGTGGACAGAGCCGTTCAGCAGCTGCAGACGGACATGGAAAACCACCTCTCGGATGAGCGCAGAGGAGAGCGTCTGCGCAGCGGGGTTCATGTGGTCATCGCTGGAAGCACCAACGCTGGCAAAAGCAGCCTACTCAACCTGCTCA
>TCONS_00006282
ATGCATTTTATAAGTTGTTGTTTGAGGAGAAGTACTGTCTCAATTGCTGTCTCAAGGTCTCTTTTAGTGAAAAGGCTGTTTTGTTCTGGCTGGCCTGGGGATGACACTATCTACTCCTTGTCGTCGGGTCAGGGCAAGTGTGGGGTGGCGGTGGTCCGGGTCAGCGGTCCGGCTTCAGCGCTCGCTGTTCGCCGTCTGACCCGAAGCCTCCCTGCGCCTCGAACTGCCAGCCTCCGCAGCATCAGCCACCCGCAGAGCAAAGAGCTGCTGGACCGCGGCCTGGTCCTATGGTTTCCAGGTCCCGCTAGTTTCACTGGAGAGGACAGTGCAGAATTCCACATTCACGGTGGTCCTGCTGTCATCAGCGGGGTCTTGCAGGCACTTGggagTTTGCCTGGCTTGCGGCCAGCAGAGGCAGGTGAGTTCACCCGACGGGCGTTTTACGCTGGAAAGTTGGATCTTACTGAAGTTGAAGGTCTTAGTGATCTGATCCATGCTGAGACAGAAGCACAGAGACGACAGGCGCTCCGGCAGATGGCAGGAGACCTGGGCCGCATCTACCAGGACTGGACAGATCAGCTTAAACGATGCTTGGCTCACGTGGAGGCATTCATCGACTTCAGTGAGGATGAACTCATAGAGGATGGAGTCTTGAATGACGTGGACAGAGCCGTTCAGCAGCTGCAGACGGACATGGAAAACCACCTCTCGGATGAGCGCAGAGGAGAGCGTCTGCGCAGCGGGGTTCATGTGGTCATCGCTGGAAGCACCAACGCTGGCAAAAGCAGCCTACTCAACCTGCTCACCCAACGTCCTGCAGCCATAGTGTCTCCTACAGCCGGGACCACCAGAGATGTACTGGAGGTCCCTCTGGACATCGGGGGCTATCCTGTGCTGCTGAGTGATACAGCAGGACTACGGGACACCAGTGACAGTGTGGAACAGGAGGGCGTCCGGCGCGCCCGGCAGCGGGTGGAGCAGGCGGATCTGTCTCTGGTGGTTGTGGACTTGACGCAGCTTCCTTCTGAGCGCCGGCATGTGCCCGTTTTCCTCAGAGGACACTTGAAGAATATCCTGGAGCGCTCctctcagcagcagcagcacatcCTGATCCTTAACAAAAGTGACCTGGTCTCTGCTGAACAGCAGCGCAGCATCCAGACGTCCCTTCAGGAGCTCTCTGATGCTCCTTCTGCATGCTTTCTGTCCTGCCACAGCAGAGATGGCCTGGAGGAGCTCCTGACTCTATTGCATAACACTCTGAAGACCCTgcaactgaatcggaagttcttaAATAATTGGAAAAACCAACACACTtctgcattgcagaataagGTGTGGTGA
>TCONS_00006283
GGTGGAGCAGGCGGATCTGTCTCTGGTGGTTGTGGACTTGACGCAGCTTCCTTCTGAGCGCCGGCATGTGCCCGTTTTCCTCAGAGGACACTTGAAGAATATCCTGGAGCGCTCctctcagcagcagcagcacatcCTGATCCTTAACAAAAGTGACCTGGTCTCTGCTGAACAGCAGCGCAGCATCCAGACGTCCCTTCAGGAGCTCTCTGATGCTCCTTCTGCATGCTTTCTGTCCTGCCACAGCAGAGATGGCCTGGAGGAGCTCCTGACTCTATTGCATAACACTCTGAAGACCCTgcaactgaatcggaagttcttaAATAATTGGAAAAACCAACACACTtctgcattgcagaataagGTGTGGTGACCCGCTGATAGGCAGCCCGACTCTGACTCAGACTCGACACCGGACTCACCTGCAGAAGAGCATT

Function

symbol description
gtpbp3 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within embryonic organ development. Located in mitochondrion. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Used to study mitochondrial metabolism disease. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 23. Orthologous to human GTPBP3 (GTP binding protein 3, mitochondrial).

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0030488 tRNA methylation biological_process
GO:0048568 embryonic organ development biological_process
GO:0002098 tRNA wobble uridine modification biological_process
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-335 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within embryonic organ development. Located in mitochondrion. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Used to study mitochondrial metabolism disease. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 23. Orthologous to human GTPBP3 (GTP binding protein 3, mitochondrial).

Ensembl:

ensembl_id ENSDARG00000018650

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006278 False 1889 mRNA 0.54 8 6009984 6037712
TCONS_00006279 False 1557 mRNA 0.55 8 6010177 6037739
TCONS_00006280 False 1664 mRNA 0.54 9 6010177 6037759
TCONS_00006281 False 818 mRNA 0.55 5 6010191 6022597
TCONS_00006282 False 1344 mRNA 0.56 10 6010291 6037489
TCONS_00006283 True 437 processed_transcript 0.53 3 6034242 6037553

Neighbor

gene id symbol gene type direction distance location
XLOC_003187 NA coding upstream 43595 5955265 ~ 5966389 (+)
XLOC_003186 rps15 coding upstream 78362 5926850 ~ 5931622 (+)
XLOC_003185 dazap1 coding upstream 84467 5880562 ~ 5925517 (+)
XLOC_003184 ndufs7 coding upstream 157269 5842632 ~ 5852715 (+)
XLOC_003183 ctdspl3 coding upstream 173698 5817202 ~ 5836286 (+)
XLOC_003189 CT573239.2 coding downstream 32116 6069875 ~ 6074783 (+)
XLOC_003190 ushbp1 coding downstream 38887 6076646 ~ 6101104 (+)
XLOC_003191 nr2f6b coding downstream 77862 6115621 ~ 6134583 (+)
XLOC_003192 tax1bp3 coding downstream 98461 6136220 ~ 6145158 (+)
XLOC_003193 slc1a6 coding downstream 114884 6152643 ~ 6175057 (+)
XLOC_003250 BX324177.11 misc downstream 5308044 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5335127 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5348603 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5380274 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5391634 11429393 ~ 11429689 (+)
XLOC_003180 NA non-coding upstream 407263 5602340 ~ 5602721 (+)
XLOC_003178 CU855733.1 non-coding upstream 478408 5531443 ~ 5531576 (+)
XLOC_003176 CR559931.1 non-coding upstream 528100 5481753 ~ 5481884 (+)
XLOC_003170 NA non-coding upstream 2226859 3771266 ~ 3783125 (+)
XLOC_003195 BX248501.1 non-coding downstream 168210 6205969 ~ 6224120 (+)
XLOC_003198 AL840638.1 non-coding downstream 285239 6322998 ~ 6324302 (+)
XLOC_003199 AL840638.2 non-coding downstream 290219 6327978 ~ 6328093 (+)
XLOC_003203 CU062501.1 non-coding downstream 405698 6443457 ~ 6444163 (+)

Expression


Co-expression Network