G1279541


Basic Information

Item Value
gene id G1279541
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30490585 ~ 30493737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1461195
CTTGATTGCGCTCTCTCTGTGAGATGGATTAAGACTTTAACTTTCATTCAGTCTTTTCAAACTTGCATCTTCATGTTTCTCGATTAACCAGCGATTGAATTGTTGAGCCGCTGACTAATACTTTTTGATAtctgacacacacaaactttAAAAAATGGCTCCACCCAGCTTTTTGTGCTTCAGAGAGTTTGAAATGGCTGAAATAATGTCTTAATAAATAACATTATTGAAAATGCTAAAAGCAATGTGCTGTTCCTTTTAGTCCTTCATCAGTAGCCTATAGCTGTTTATAGAGccagttatactgtatataactgaTTGTATAAGGGAAAGTAAATTAACTGAACAGAGCCCCTGTTCTAAGTTTTGGGATGTATGTTCTACATATGCTTAGCACATGAGTGAGTGCTCTGACTGGATGTTCTAAATCGAGAGGAATGGGTGAGAGGGAGCACTTTTTCTTCCAGACTGTATacagttaagggAGGCCTAGAGGAAGGAATATCACATTTTACTACAACTCCAACGTAGGAGAATCTTCTCACAGCTATGCCTATACATAGGACCCCATGGTCCACTGTAGAATAGTCCTATAGTCTACCGTAAAGGACTCGGAACTGAGCCTTAGGTAAAAGTCATCAATAGTGTTCTTCTCTAATCCCCATTGTGGatgatacactgagtgtacaaaacggaACGCCCGGATAGCAAGGACCCATAACAAGGAAAGGTTGAAGGGCAGCACCATGGGAGTTAGTCGTAACAgtatgtctgtgtcccaaatggcaccctgatCAAAAGTAAGGTGCACGGTGCCCTTTGGGACATCACCACTATACCTCCTATATTTTCCAAGATAGAATAAAACGGCATATTAGTGGTCACAATTCAGAATAAAATAGCatttacactgagtggacaaaacattaggaacatgctCTTTCCGTCACAGACTgaccatgatcccttattgatgtcacctgttaaatccacttaaaccagtgtagttgaaggggaggagacaggataaagaaggatttttaagccttgacaattgagacatgaattgtgtatgtgtgccattcagacagTGAATGGGCAACATAAAATATTTAACTGCCTTTGAATgcgatatggtagtaggtgccaggcgcaccagtttgggtgtgtcaagaactgcaacactgctggggttcacgttcaacagtttcctgtgtgtgtcaagaatagcccacccaaaagacatccagccaacttgacacaactgtgggaagcattggagtccacatgggccagcatccctgtggaatactttcgacaccttgtaggggCCATGCCACAAGgaattgaggcttttctgagggcaaaaggtggtgcaactcaatattaggaaggtgttcctaatggttttgtacactcagtgtacaattaaacaataaggcccgaggaggtgtggtatatggctaatatacagGCAACGCAGATtgtctggatacagcccttagcaatggtatattggtcatataccacaaaccccagaggtgccttattgctattatgaacTGCTTACcgacgtaattagaacagtaaaaagttatgttttgtcatacccctggtatacggtctgatataccatgactttcagccaatcagtattcagggttcgaaccacctggtttataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1461195 True 1683 lncRNA 0.42 2 30490585 30493737

Neighbor

gene id symbol gene type direction distance location
htr5ab htr5a coding upstream 74210 30395817 ~ 30416375 (+)
LOC110489977 LOC106590110 coding upstream 145019 30329810 ~ 30345566 (+)
tgif1 LOC106590112 coding upstream 514499 29969944 ~ 29976086 (+)
LOC110489968 LOC106590118 coding upstream 794634 29689717 ~ 29695951 (+)
ackr4b LOC106590119 coding upstream 825664 29657968 ~ 29664921 (+)
en2a en2 coding downstream 24259 30517996 ~ 30521339 (+)
LOC118938958 NA coding downstream 39359 30533096 ~ 30533257 (+)
rbm33a rbm33 coding downstream 61334 30555071 ~ 30601062 (+)
rnf32 rnf32 coding downstream 220975 30714712 ~ 30725178 (+)
nom1 nom1 coding downstream 290186 30783923 ~ 30791701 (+)
G1279535 NA non-coding upstream 20239 30470111 ~ 30470346 (+)
G1279525 NA non-coding upstream 34521 30455863 ~ 30456064 (+)
G1279520 NA non-coding upstream 43432 30446877 ~ 30447153 (+)
G1279517 NA non-coding upstream 46873 30443484 ~ 30443712 (+)
G1279504 NA non-coding upstream 55663 30434672 ~ 30434922 (+)
G1279605 NA non-coding downstream 23652 30517389 ~ 30517605 (+)
G1279793 NA non-coding downstream 310066 30803803 ~ 30804010 (+)
G1279758 NA non-coding downstream 328184 30821921 ~ 30822371 (+)
G1279805 NA non-coding downstream 334890 30828627 ~ 30828827 (+)
G1279349 NA other upstream 187166 30303033 ~ 30303419 (+)
G1277279 NA other upstream 1674775 28815366 ~ 28815810 (+)
G1277159 NA other upstream 1866367 28574316 ~ 28624218 (+)
G1276733 NA other upstream 2234179 28190186 ~ 28256406 (+)
G1279833 NA other downstream 450434 30944171 ~ 30947330 (+)
G1281462 NA other downstream 1502430 31996167 ~ 31996513 (+)
G1282302 NA other downstream 2193821 32687558 ~ 32698036 (+)
G1284354 NA other downstream 3618070 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 5541846 36035583 ~ 36093396 (+)

Expression


Co-expression Network