G1279958


Basic Information

Item Value
gene id G1279958
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31075291 ~ 31127396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1461658
gaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctaggtagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaatacatttgatttgatttatgataCAACGAGAGCAATTGGTGGCAAAAGAGCAGAGCACAgagatacactgagtatacaaaacattaagaactctttccatgacttgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacttcttaACTCAGTGTggatgaaggtgaggagacaggttaaaggaggggttttaagccttgagacaattgagacatggattgtgtatgtgtgccattcagagggtaaatgggcaagacaaaatatttaagtgcctttgaacggggtatggtagtaggtgccaggcgcaccggtttgtgtcaagaactgcaacattgctggggtttttcacgctcaacagagtcaacatgggccagcat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1461658 True 627 lncRNA 0.45 2 31075291 31127396

Neighbor

gene id symbol gene type direction distance location
dnajb6b NA coding upstream 161176 30866978 ~ 30914115 (+)
LOC118938793 NA coding upstream 163671 30910133 ~ 30911620 (+)
ube3c ube3c coding upstream 217339 30809968 ~ 30857952 (+)
nom1 nom1 coding upstream 283590 30783923 ~ 30791701 (+)
rnf32 rnf32 coding upstream 350113 30714712 ~ 30725178 (+)
dync2i1 wdr60 coding downstream 161803 31289199 ~ 31306437 (+)
wdr97 LOC106590093 coding downstream 179250 31306646 ~ 31332697 (+)
nrn1a LOC106590090 coding downstream 314098 31441494 ~ 31447498 (+)
LOC110490003 cssa29h18orf63 coding downstream 631330 31758726 ~ 31792146 (+)
LOC110490007 LOC106590083 coding downstream 783390 31910786 ~ 31924479 (+)
G1279809 NA non-coding upstream 239829 30835047 ~ 30835462 (+)
G1279806 NA non-coding upstream 243293 30831666 ~ 30831998 (+)
G1279805 NA non-coding upstream 246464 30828627 ~ 30828827 (+)
G1279758 NA non-coding upstream 252920 30821921 ~ 30822371 (+)
G1279793 NA non-coding upstream 271281 30803803 ~ 30804010 (+)
G1280062 ncapg2 non-coding downstream 83945 31211341 ~ 31214897 (+)
G1280080 NA non-coding downstream 110278 31237674 ~ 31238866 (+)
G1280642 NA non-coding downstream 240163 31367559 ~ 31373233 (+)
G1280645 NA non-coding downstream 244158 31371554 ~ 31372376 (+)
G1280663 NA non-coding downstream 269648 31397044 ~ 31397294 (+)
G1279833 NA other upstream 127961 30944171 ~ 30947330 (+)
htr5ab htr5a other upstream 667274 30395817 ~ 30416375 (+)
G1279349 NA other upstream 771872 30303033 ~ 30303419 (+)
G1277279 NA other upstream 2259481 28815366 ~ 28815810 (+)
G1277159 NA other upstream 2451073 28574316 ~ 28624218 (+)
G1281462 NA other downstream 868771 31996167 ~ 31996513 (+)
G1282302 NA other downstream 1560162 32687558 ~ 32698036 (+)
G1284354 NA other downstream 2984411 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 4908187 36035583 ~ 36093396 (+)
G1287489 LOC106590045 other downstream 5381682 36509078 ~ 36510512 (+)

Expression


Co-expression Network