G1280645


Basic Information

Item Value
gene id G1280645
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31371554 ~ 31372376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1462415
ATGGCTTTGTAACAATGTGCTCCCGGGACTTGCATGGGAGGATTCAGAGCATCTGTATGTGAGCAATTCTGAAATGAGCCTTGAACAGCTGTTTTAATTGAGCTGGTTTAAAGTCATCCCAATGTGGTCTAATCATGAGAGGAACGGAGGTAGTGCTACTGACCCAGTTGAGGCTGGGCTCCCGGCTGAACTCGTGGCCCCGAGCTGTACTGAAGTCGTAGTCGGGCCTGAATGACTCGTTGAGCGTGGTGATGAGGTAGAACAATGTCTTCCTGCAACACTTGTCACTCAGAGggttcacaccatcctcactgcTCTTCCCTAGGGGGTGGGCTCGTGGCGCTGGACTGGGGGGGCGAGAGGGCCTCTAGGACATGTGGTTCCCCTTCCTGGCAGAACTGCTTAAACATGTGCTTGTCATCACCAGCCATCTTGCAGGAGTAGCTCTCGATCctaaagagagagacaaaacccAGAGTTAAACTGTTGGCATTTCCATTCATTTACTGACTGCGGAGGACATGGGTATTGTCTCAAACTAATCATCTCCCTAATTCAATAATGCAAACCGTACAGTATCTC

Function

NR:

description
repressor of RNA polymerase III transcription MAF1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1462415 True 582 lncRNA 0.50 2 31371554 31372376

Neighbor

gene id symbol gene type direction distance location
wdr97 LOC106590093 coding upstream 38857 31306646 ~ 31332697 (+)
dync2i1 wdr60 coding upstream 65117 31289199 ~ 31306437 (+)
dnajb6b NA coding upstream 457439 30866978 ~ 30914115 (+)
LOC118938793 NA coding upstream 459934 30910133 ~ 30911620 (+)
ube3c ube3c coding upstream 513602 30809968 ~ 30857952 (+)
nrn1a LOC106590090 coding downstream 69118 31441494 ~ 31447498 (+)
LOC110490003 cssa29h18orf63 coding downstream 386350 31758726 ~ 31792146 (+)
LOC110490007 LOC106590083 coding downstream 538410 31910786 ~ 31924479 (+)
inhbaa LOC106590082 coding downstream 590459 31962835 ~ 31974011 (+)
LOC118938888 NA coding downstream 635745 32008121 ~ 32011745 (+)
G1280080 NA non-coding upstream 132688 31237674 ~ 31238866 (+)
G1280062 ncapg2 non-coding upstream 156657 31211341 ~ 31214897 (+)
G1279966 NA non-coding upstream 239401 31084430 ~ 31132153 (+)
G1279958 NA non-coding upstream 244158 31075291 ~ 31127396 (+)
G1280663 NA non-coding downstream 24668 31397044 ~ 31397294 (+)
G1280668 NA non-coding downstream 36963 31409339 ~ 31409552 (+)
G1280681 LOC106581772 non-coding downstream 54695 31427071 ~ 31427560 (+)
G1280683 NA non-coding downstream 57179 31429555 ~ 31429783 (+)
G1280686 NA non-coding downstream 59911 31432287 ~ 31432869 (+)
G1279833 NA other upstream 424224 30944171 ~ 30947330 (+)
htr5ab htr5a other upstream 963537 30395817 ~ 30416375 (+)
G1279349 NA other upstream 1068135 30303033 ~ 30303419 (+)
G1277279 NA other upstream 2555744 28815366 ~ 28815810 (+)
G1277159 NA other upstream 2747336 28574316 ~ 28624218 (+)
G1281462 NA other downstream 623791 31996167 ~ 31996513 (+)
G1282302 NA other downstream 1315182 32687558 ~ 32698036 (+)
G1284354 NA other downstream 2739431 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 4663207 36035583 ~ 36093396 (+)
G1287489 LOC106590045 other downstream 5136702 36509078 ~ 36510512 (+)

Expression


Co-expression Network