G1280808


Basic Information

Item Value
gene id G1280808
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31499577 ~ 31500277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1462582
cttcttcttcttctttagacTTTATATTGCGGTTGGCAACCAAATTTGATGGTGCATTACCactaccaactggactggagtgtggaccttagttcatctttcaatcacccacgtcggtttatgctcctaaaaaccaatgagtagATGGGAGAGACGTAACTTGCAGCACGtcaagcatcacaaatagaaccaagttctattttagcacaCGACTACGCAGATGCTCGTTGACGCActtgagcagtgtgggtgcaatgattgaataacatgtacagtatgtgtacatttattttgcaacgcgagCAGTGTGGACCGAATGTGAGATGGGTTCTAATGATGATCTTAACGCTACAAAGGCTCTGGGAAACGAGAACCTGGGCTCCTAAGTACTGTCTTTAATTTCCTACACTTTCAGTGGGTGAAGAATACCTTATGTTTCTCTTCAACTTTCCCAAATATCTTGGTGCCATGACTTCATGCTCTAGATTGGTTTTGTATTTTTTGAGAAGGTCAAGTTTCTTACTTCCCATCGGTATGTTTGAGGTATGGTCATGCACTAACGGCCAATTCTCAAAATGGCAAGTTGTCTCTTAAAGGTACACATCTCTTTCAGACTTAAGAAGTAGTCTGGAGGTTAGGAATCCCAGATCTGAACCAGTTCCAGATAAGGTAGGAAGAATGTACCATATTTAATATACCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1462582 True 701 lncRNA 0.41 1 31499577 31500277

Neighbor

gene id symbol gene type direction distance location
nrn1a LOC106590090 coding upstream 52079 31441494 ~ 31447498 (+)
wdr97 LOC106590093 coding upstream 166880 31306646 ~ 31332697 (+)
dync2i1 wdr60 coding upstream 193140 31289199 ~ 31306437 (+)
dnajb6b NA coding upstream 585462 30866978 ~ 30914115 (+)
LOC110490003 cssa29h18orf63 coding downstream 258449 31758726 ~ 31792146 (+)
LOC110490007 LOC106590083 coding downstream 410509 31910786 ~ 31924479 (+)
inhbaa LOC106590082 coding downstream 462558 31962835 ~ 31974011 (+)
LOC118938888 NA coding downstream 507844 32008121 ~ 32011745 (+)
LOC110490011 LOC106590060 coding downstream 850528 32350805 ~ 32480547 (+)
G1280793 NA non-coding upstream 10941 31488428 ~ 31488636 (+)
G1280754 NA non-coding upstream 44685 31454670 ~ 31454892 (+)
G1280687 NA non-coding upstream 64721 31434618 ~ 31434856 (+)
G1280686 NA non-coding upstream 66708 31432287 ~ 31432869 (+)
G1280683 NA non-coding upstream 69794 31429555 ~ 31429783 (+)
G1280817 NA non-coding downstream 3310 31503587 ~ 31504112 (+)
G1280826 NA non-coding downstream 10851 31511128 ~ 31511451 (+)
G1280851 NA non-coding downstream 28451 31528728 ~ 31528929 (+)
G1280855 NA non-coding downstream 31691 31531968 ~ 31532242 (+)
G1280859 NA non-coding downstream 36573 31536850 ~ 31537118 (+)
G1279833 NA other upstream 552247 30944171 ~ 30947330 (+)
htr5ab htr5a other upstream 1091560 30395817 ~ 30416375 (+)
G1279349 NA other upstream 1196158 30303033 ~ 30303419 (+)
G1277279 NA other upstream 2683767 28815366 ~ 28815810 (+)
G1277159 NA other upstream 2875359 28574316 ~ 28624218 (+)
G1281462 NA other downstream 495890 31996167 ~ 31996513 (+)
G1282302 NA other downstream 1187281 32687558 ~ 32698036 (+)
G1284354 NA other downstream 2611530 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 4535306 36035583 ~ 36093396 (+)
G1287489 LOC106590045 other downstream 5008801 36509078 ~ 36510512 (+)

Expression


Co-expression Network