G1280888


Basic Information

Item Value
gene id G1280888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31558432 ~ 31559436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1462663
CTGTCATACTGCGATTTCAAAGGCTATAATAGAAGAATACTGTTTGGGGCCTTTGAGGCCTTTTAGACAGAACGAGACGCAGACCTTTGAGTCGGAATGATGAATTGATGATTTTAAGGATCAGTtggctgattgattgattgatttgattgatcaaATGACTCTAGCTGTTCTTTTGTCCAATCCCTGGACTTTTAGAGGTAGTTGAACTAATAGTATGCTTAAAGGCAGACTCAGCAATGTGACATAATCTTACACTGTGGGGAAACGTCTTGCTTCAAAGGATTACCACCATTGGCAAACTGGGAAGAGGCAATAGCATGCATCATTTTCCAGATTTAAATTTGAATATTGTTGACATCTGTGATCAGGAAGTCACCCAGTTCTACATGATGTCAGATGACTGAGTCTGTTGTAACCTAACATGTTGGGCAACACTATTTTACAGTGGTCATATCACAGATTTCATCTTGATCCTcccgtcttataggcagaaactcaaacaggaagtgcttCTGCTTCGAactattcaacactggtctgaccaaacGGAATCCTCGCTTCAGTGTTGTTTTTATCACGTGGACTGGTAGTGTGGGAAAATAATCAAGGTGTATACacggatacggtgactgagtttataaggaagtgtataggagatgtagtacccactgtgactattaaaacctaccctaaccagaaaccgtggatagatggtagcattcgcgtgaaactgaaagcacgaaccaccgcatttaacaatGGCAAGGAGACTGGTATTATGGCAGAATataaacagtgcagttattcactccacaaggcaatcaaacaagctaaacgtcagtatagagatgaagtggagtcacaattcaacagcccagacacgagacgtatgtggcaggaactacagacaatcacggactacaaaaggaaaaccagacACATTGCCGAGactgacgtcttgcttccagacaggTTAAACACATTCTTCGCACACTTTCAGGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106600457

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1462663 True 1005 lncRNA 0.42 1 31558432 31559436

Neighbor

gene id symbol gene type direction distance location
nrn1a LOC106590090 coding upstream 110934 31441494 ~ 31447498 (+)
wdr97 LOC106590093 coding upstream 225735 31306646 ~ 31332697 (+)
dync2i1 wdr60 coding upstream 251995 31289199 ~ 31306437 (+)
dnajb6b NA coding upstream 644317 30866978 ~ 30914115 (+)
LOC110490003 cssa29h18orf63 coding downstream 199290 31758726 ~ 31792146 (+)
LOC110490007 LOC106590083 coding downstream 351350 31910786 ~ 31924479 (+)
inhbaa LOC106590082 coding downstream 403399 31962835 ~ 31974011 (+)
LOC118938888 NA coding downstream 448685 32008121 ~ 32011745 (+)
LOC110490011 LOC106590060 coding downstream 791369 32350805 ~ 32480547 (+)
G1280859 NA non-coding upstream 21314 31536850 ~ 31537118 (+)
G1280855 NA non-coding upstream 26190 31531968 ~ 31532242 (+)
G1280851 NA non-coding upstream 29503 31528728 ~ 31528929 (+)
G1280826 NA non-coding upstream 46981 31511128 ~ 31511451 (+)
G1280817 NA non-coding upstream 54320 31503587 ~ 31504112 (+)
G1280890 NA non-coding downstream 1177 31560613 ~ 31560962 (+)
G1280893 NA non-coding downstream 2276 31561712 ~ 31561956 (+)
G1280993 NA non-coding downstream 147160 31706596 ~ 31743544 (+)
G1281163 NA non-coding downstream 202170 31761606 ~ 31761824 (+)
G1281164 NA non-coding downstream 202886 31762322 ~ 31762633 (+)
G1279833 NA other upstream 611102 30944171 ~ 30947330 (+)
htr5ab htr5a other upstream 1150415 30395817 ~ 30416375 (+)
G1279349 NA other upstream 1255013 30303033 ~ 30303419 (+)
G1277279 NA other upstream 2742622 28815366 ~ 28815810 (+)
G1277159 NA other upstream 2934214 28574316 ~ 28624218 (+)
G1281462 NA other downstream 436731 31996167 ~ 31996513 (+)
G1282302 NA other downstream 1128122 32687558 ~ 32698036 (+)
G1284354 NA other downstream 2552371 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 4476147 36035583 ~ 36093396 (+)
G1287489 LOC106590045 other downstream 4949642 36509078 ~ 36510512 (+)

Expression


Co-expression Network