G1281433 (LOC106579309)


Basic Information

Item Value
gene id G1281433
gene name LOC106579309
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31954564 ~ 31954926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1463247
catgaaagcctgcttggagttttccaaaaggcacctaaagactctcagaccaagagattctccggtctgatgaaaccaagattgaactcattggcctgattgccaagcgtcacgtctggagaaaacctggcaccatccctacggtgaagcatggtggtggcaacatcatgctgtggggatgtttttcagcggcagggactgggagactagtcaggatcgaggcaaagatgaacggagcaaagtacagagagatccttgattaaaacctgctccaaagcgctcaggacccACCCGACAGGACAACAAGCCTAAGCACAaggccaagacaacgcaggagtggcttgtcTCTGAAttcccttgagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1463247 True 363 lncRNA 0.51 1 31954564 31954926

Neighbor

gene id symbol gene type direction distance location
LOC110490007 LOC106590083 coding upstream 30085 31910786 ~ 31924479 (+)
LOC110490003 cssa29h18orf63 coding upstream 162418 31758726 ~ 31792146 (+)
nrn1a LOC106590090 coding upstream 507066 31441494 ~ 31447498 (+)
wdr97 LOC106590093 coding upstream 621867 31306646 ~ 31332697 (+)
dync2i1 wdr60 coding upstream 648127 31289199 ~ 31306437 (+)
inhbaa LOC106590082 coding downstream 7909 31962835 ~ 31974011 (+)
LOC118938888 NA coding downstream 53195 32008121 ~ 32011745 (+)
LOC110490011 LOC106590060 coding downstream 395879 32350805 ~ 32480547 (+)
LOC118938962 NA coding downstream 977870 32932796 ~ 32932850 (+)
LOC110490013 LOC106590056 coding downstream 1059280 33014206 ~ 33016968 (+)
G1281432 NA non-coding upstream 118 31954026 ~ 31954446 (+)
G1281428 NA non-coding upstream 3238 31951068 ~ 31951326 (+)
G1281423 NA non-coding upstream 7989 31946357 ~ 31946575 (+)
G1281410 NA non-coding upstream 16576 31937787 ~ 31937988 (+)
G1281294 NA non-coding upstream 48892 31905462 ~ 31905672 (+)
G1281447 NA non-coding downstream 20944 31975870 ~ 31976228 (+)
G1281448 NA non-coding downstream 21319 31976245 ~ 31976450 (+)
G1281450 NA non-coding downstream 25431 31980357 ~ 31980734 (+)
G1281461 NA non-coding downstream 40403 31995329 ~ 31995593 (+)
G1281623 NA non-coding downstream 166037 32120963 ~ 32121903 (+)
G1279833 NA other upstream 1007234 30944171 ~ 30947330 (+)
htr5ab htr5a other upstream 1546547 30395817 ~ 30416375 (+)
G1279349 NA other upstream 1651145 30303033 ~ 30303419 (+)
G1277279 NA other upstream 3138754 28815366 ~ 28815810 (+)
G1277159 NA other upstream 3330346 28574316 ~ 28624218 (+)
G1281462 NA other downstream 41241 31996167 ~ 31996513 (+)
G1282302 NA other downstream 732632 32687558 ~ 32698036 (+)
G1284354 NA other downstream 2156881 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 4080657 36035583 ~ 36093396 (+)
G1287489 LOC106590045 other downstream 4554152 36509078 ~ 36510512 (+)

Expression


Co-expression Network