G1282159 (LOC106590060)


Basic Information

Item Value
gene id G1282159
gene name LOC106590060
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 32475919 ~ 32478516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1464009
GTGAACCAACACCCCCCATACAAACATCAAATATAGTATTAACCTAAAGGGAGATTGATAGTAGAGACAGAGTGTATGGGCACTTGTGATAACCAGGTCAAAGTCATAGGAtccatcctaaatggcaccccgttccctatatagtgtactacctatgactggtcaaaagtagtgcactatatagggaagagggtgccatttgggacttagcGAGAGAGTTCAATATTAAAAGCAATGACCATCTGTTCTCAGTGAAGAGCATCGGGGTTAGGCAAATAATTGTAATACTCAACAGTAACTTAATCATTATTACTTTAGGCTGGCTGGCTACTGAATACATGTAGTGTGTGCTTTCTGTCAAATATAGGCTGGTTTATATGTATATAGCACAACACACAATCACATATTTCCCTGTTTTTGTGTTTAACACATTATTGATCAaaatacaaacacatacatacatacatacatacagtactgcATTACATATTGGAGCAACAGTAAGTAAACACTGTTTTCAGAACGTTAAAGTGATTCTGAGAAAATAAGAAACACAGGcattgcttcccaaatggcaccctattctcaatatcaaataaaaaACACAGATTTACAGATGTTATCTAAGATGCAGCGAAATACTTGTTTTTCAAGTTTACtatgtttgaccagagccctataggtcctggtcaaaataGAGAACTATatgaggaatagggtgccatttgggacagtgaACCACCACCACCAGTATTGATTGTTCAGTCCCTTTATGCAGTCTCTTTATGAGCAACACTTGGCCAAAGGTGGCTTGGTGGACTGTACATAGTTAATGTATACACTGCTAAATCGCAGCAAAGACAAAAGCAGCCTAGAAGCAGATCTGAGTTTCAATTACTTgaaaaatctatttaaaataCATCTGTGCCCGTTTAAACTTTCCTGGCTTAATAAACCAATAGAAAAGTCCCAAAAATGCCAAACCCTGCCCACCTGTCACTCCAGAGAGACTCAAGCAATCCCTTAAAGGTTTTGAAAATATTGTTCAAGTATTTGATCCCAGGTCTGCCAAAAGGTCCTAACAATGTATATTGCAGCTCCAGCTGGAGATATGTACTCAGTACTGACACTTAGCTAAACAACATGATCACTGACTGAAGTAACTCTACTGACCACAGAAAGAAACAGACCAGGACAGATCGGCCATGGTGAATTACCATTGGCCCCAGGTCCATAGGGTACCCCAAATCAGAGGGAGAGAGTATTTGTATCCAGAATAACTCCAAGTCAACAATTGGAGGAAAGATTCTTTCCCTAGTTTGTTCGTGGTTGTCCTGgttgtctcactctctgtgtgtctgtcggcAGTTTTCTTGGCCACCCCTGATATGTGTAAAATCCCTTATTCTCATCATAGTCCTGGTTGAGGAAGGGTGGAGCCACAGTAGGGGGTGGGAGAGGCATGTTAATTGACATGCCTTCTGGCCCCTCCCTTCAGCCGCAGGAGATGACAGTAAAGCGTTTAGAGATACAGGACATGTTGTGGAGCACGATTcccaggagaaagagcaggacgCAGGCTACCAGGATCACTGTACACACCCCGGACCACGTGGAGCCcttcccccctccaccaccaccacctcccccgactccccttctctctgtctcctccaggcCTTCGAGACTCATCCCCAGACGCAGGGGCTGCAACTCAGGCATAGCCACCACCGCCACATCCACCTTCTGCTGCCCACTGCCACCTGGCAAGAACCGGCAGCCCAGTTCGCCGGGTAACAGTGCCCTGTCCTTGGCGACAGGCAGGGGCAGCATGTAGCAGCCATTGCTAGGCAGGCGGATAAAGACCGGCGTGTGCTCGGAGGCGTGCGGAATGGCGATAACGGTGATGATGTCGGGGTCGTCGGGGAGCTGGGATATGGAAAAGCCGGCGGGGAGTTTGGTGACGCCGCGGCACCAGGGGCATCGGATCTCTTTCTGGCTGGACCTCATCTGGGTCAGGCACACGGAGCAGCACGTGTGTCTGCAGTCCAGCAGCTTGGGCCTCCGCCGCGGGCTGTAGTAGTTAAAACAGATCTGACACTCCAAGATGGAGTCctgcgagagagacagagtctcCATTTTGTGTTGGATTGTTATTATGGGTCCTTGATAGCCTGGTCGAGCAGACTGACCGTTGCGCTCACGTTTCGTTTCACTTACTATAAACAGAATAGGCTGGCTTCACAAGGCTAGTTTCAGAAGAAGGCGAGAACGTGCTCAACTCTTTTCCTCTTGCGTAAACAAATGAAAAGGTGCTTGGGACCCTTTGTTGTAAAATGCTGGTGTTTTTGACTACTGCAACACAAACCAAGATGACAAAGAATAACGTCTCTTATTATTTGACTGTATTAGCAGAAAGCCAAATGGTATCAAGATCCTCTACAAGGGGCTTGAATCCTTCTCACAGCAAAGCTGCGCTGTTTAAGTATGTATCCTCTCCTGTGCTCTCCTCTCTGTGCTCTGCTCTGCGTCCCTCCGTGTGTCCTTCCACCCACCCGCCGTCTCAGTGTCGGTGTGATGTCACAGGACGATCAAGGT
>TU1464010
AAATATAGTATTAACCTAAAGGGAGATTGATAGTAGAGACAGAGTGTATGGGCACTTGTGATAACCAGGTCAAAGTCATAGGAtccatcctaaatggcaccccgttccctatatagtgtactacctatgactggtcaaaagtagtgcactatatagggaagagggtgccatttgggacttagcGAGAGAGTTCAATATTAAAAGCAATGACCATCTGTTCTCAGTGAAGAGCATCGGGGTTAGGCAAATAATTGTAATACTCAACAGTAACTTAATCATTATTACTTTAGGCTGGCTGGCTACTGAATACATGTAGTGTGTGCTTTCTGTCAAATATAGGCTGGTTTATATGTATATAGCACAACACACAATCACATATTTCCCTGTTTTTGTGTTTAACACATTATTGATCAaaatacaaacacatacatacatacatacatacagtactgcATTACATATTGGAGCAACAGTAAGTAAACACTGTTTTCAGAACGTTAAAGTGATTCTGAGAAAATAAGAAACACAGGcattgcttcccaaatggcaccctattctcaatatcaaataaaaaACACAGATTTACAGATGTTATCTAAGATGCAGCGAAATACTTGTTTTTCAAGTTTACtatgtttgaccagagccctataggtcctggtcaaaataGAGAACTATatgaggaatagggtgccatttgggacagtgaACCACCACCACCAGTATTGATTGTTCAGTCCCTTTATGCAGTCTCTTTATGAGCAACACTTGGCCAAAGGTGGCTTGGTGGACTGTACATAGTTAATGTATACACTGCTAAATCGCAGCAAAGACAAAAGCAGCCTAGAAGCAGATCTGAGTTTCAATTACTTgaaaaatctatttaaaataCATCTGTGCCCGTTTAAACTTTCCTGGCTTAATAAACCAATAGAAAAGTCCCAAAAATGCCAAACCCTGCCCACCTGTCACTCCAGAGAGACTCAAGCAATCCCTTAAAGGTTTTGAAAATATTGTTCAAGTATTTGATCCCAGGTCTGCCAAAAGGTCCTAACAATGTATATTGCAGCTCCAGCTGGAGATATGTACTCAGTACTGACACTTAGCTAAACAACATGATCACTGACTGAAGTAACTCTACTGACCACAGAAAGAAACAGACCAGGACAGATCGGCCATGGTGAATTACCATTGGCCCCAGGTCCATAGGGTACCCCAAATCAGAGGGAGAGAGTATTTGTATCCAGAATAACTCCAAGTCAACAATTGGAGGAAAGATTCTTTCCCTAGTTTGTTCGTGGTTGTCCTGgttgtctcactctctgtgtgtctgtcggcAGTTTTCTTGGCCACCCCTGATATGTGTAAAATCCCTTATTCTCATCATAGTCCTGGTTGAGGAAGGGTGGAGCCACAGTAGGGGGTGGGAGAGGCATGTTAATTGACATGCCTTCTGGCCCCTCCCTTCAGCCGCAGGAGATGACAGTAAAGCGTTTAGAGATACAGGACATGTTGTGGAGCACGATTcccaggagaaagagcaggacgCAGGCTACCAGGATCACTGTACACACCCCGGACCACGTGGAGCCcttcccccctccaccaccaccacctcccccgactccccttctctctgtctcctccaggcCTTCGAGACTCATCCCCAGACGCAGGGGCTGCAACTCAGGCATAGCCACCACCGCCACATCCACCTTCTGCTGCCCACTGCCACCTGGCAAGAACCGGCAGCCCAGTTCGCCGGGTAACAGTGCCCTGTCCTTGGCGACAGGCAGGGGCAGCATGTAGCAGCCATTGCTAGGCAGGCGGATAAAGACCGGCGTGTGCTCGGAGGCGTGCGGAATGGCGATAACGGTGATGATGTCGGGGTCGTCGGGGAGCTGGGATATGGAAAAGCCGGCGGGGAGTTTGGTGACGCCGCGGCACCAGGGGCATCGGATCTCTTTCTGGCTGGACCTCATCTGGGTCAGGCACACGGAGCAGCACGTGTGTCTGCAGTCCAGCAGCTTGGGCCTCCGCCGCGGGCTGTAGTAGTTAAAACAGATCTGACACTCCAAGATGGAGTCctgcgagagagacagagtctcCATTTTGTGTTGGATTGTTATTATGGGTCCTTGATAGCCTGGTCGAGCAGACTGACCGTTGCGCTCACGTTTCGTTTCACTTACTATAAACAGAATAGGCTGGCTTCACAAGGCTAGTTTCAGAAGAAGGCGAGAACGTGCTCAACTCTTTTCCTCTTGCGTAAACAAATGAAAAGGTGCTTGGGACCCTTTGTTGTAAAATGCTGGTGTTTTTGACTACTGCAACACAAACCAAGATGACAAAGAATAACGTCTCTTATTATTTGACTGTATTAGCAGAAAGCCAAATGGTATCAAGATCCTCTACAAGGGGCTTGAATCCTTCTCACAGCAAAGCTGCGCTGTTTAAGTATGTATCCTCTCCTGTGCTCTCCTCTCTGTGCTCTGCTCTGCGTCCCTCCGTGTGTCCTTCCACCCACCCGCCGTCTCAGTGTCGGTGTGATGTCACAGGACGATCAAGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1464009 False 2598 TUCP 0.47 1 32475919 32478516
TU1464010 True 2570 TUCP 0.47 1 32475919 32478488

Neighbor

gene id symbol gene type direction distance location
sugct LOC106590081 coding downstream 189699 32120931 ~ 32286220 (-)
LOC110490834 NA coding downstream 443570 32018399 ~ 32032349 (-)
cidea LOC106590084 coding downstream 574532 31887323 ~ 31901387 (-)
tubb6 LOC106590085 coding downstream 591404 31871514 ~ 31884515 (-)
dipk1c LOC106590086 coding downstream 629907 31824422 ~ 31846012 (-)
LOC110490012 LOC106590058 coding upstream 79222 32557738 ~ 32679847 (-)
LOC110490014 LOC106590055 coding upstream 788488 33267004 ~ 33348714 (-)
LOC118938795 NA coding upstream 812713 33291229 ~ 33294593 (-)
LOC110516899 LOC106595224 coding upstream 1425428 33903944 ~ 33906267 (-)
LOC118938915 NA coding upstream 2432719 34911235 ~ 34912329 (-)
G1282150 NA non-coding downstream 13024 32462674 ~ 32462895 (-)
G1281550 NA non-coding downstream 439734 32009152 ~ 32036185 (-)
G1281531 NA non-coding downstream 494207 31981374 ~ 31981712 (-)
G1281526 NA non-coding downstream 499833 31975832 ~ 31976086 (-)
G1281525 NA non-coding downstream 500649 31975055 ~ 31975270 (-)
G1282164 NA non-coding upstream 7016 32485532 ~ 32485766 (-)
G1282197 NA non-coding upstream 27120 32505636 ~ 32505855 (-)
G1282204 NA non-coding upstream 30497 32509013 ~ 32509254 (-)
G1282224 NA non-coding upstream 44802 32523318 ~ 32523550 (-)
G1282246 NA non-coding upstream 61686 32540202 ~ 32540439 (-)
G1281363 NA other downstream 609782 31865289 ~ 31866137 (-)
G1281361 NA other downstream 611283 31864234 ~ 31864636 (-)
dlgap1b LOC106590111 other downstream 2487403 29979175 ~ 30253803 (-)
G1278860 NA other downstream 2844151 29631025 ~ 29631768 (-)
LOC110489947 LOC106590135 other downstream 3772366 28701177 ~ 28724125 (-)
G1283257 NA other upstream 784064 33262580 ~ 33266218 (-)
G1285645 NA other upstream 2506337 34984853 ~ 34985274 (-)
G1287067 NA other upstream 3679920 36158436 ~ 36158733 (-)
G1288280 NA other upstream 4760658 37239174 ~ 37239410 (-)
G1288297 NA other upstream 4782499 37261015 ~ 37261648 (-)

Expression


Co-expression Network