G1283172 (LOC106590055)


Basic Information

Item Value
gene id G1283172
gene name LOC106590055
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 33262605 ~ 33268078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1465067
ATCATGTAAATATGCAGTAGAAAATCATGTTGTACAAAGCAGATAGATGAATTAATGGGCATCGTGTCATGACCGGGCCCCTTTTAACAACTTCACATACTATAACCTCTCATAGTATTAATCCACATAGAAAAAAAATTCTGCATCCCTATTCTCCATCCGTcccctgaagtgtgcacttgcatACTTTCTCGTATAGTAAGTAAGCCTTATCTGAGCCAAAACGTCCCATGGGGCAGGAGCCTAGCCCCtttttctgtagcgtgaggcaggtTGGTGTACAAGTACAGCCCCTAGACAGGATGCTACCTTCTCGCATGGATTTAACATTCCTATTCTTGTAAATCCATGACGGGTAGTGTGTAAGTGCACCATTtaggagaagggtggagaattgGGACATAGCAATAGACTGCTCAATAACATAGTCAGCAACATAATATAGAGGCAACCTTAAGGCTAGCCAACTGTCTACAGTTGAGGAGGACAtcagtactgtatactgtaggctagctctggtccagggtgtgaATGGAAGCATCGGTGTTAGCAGGCCgcactaacaccctggaccagaatTTACTGTAGGCTAGCCATATCTGGCAGCTAACTCTTGTGTCCTTAGCTGAGCATGGTGTTAATGCACAAACATGTATTTGTAGTGAAATTATGCTGCTGACACCCTGTATTAAAGAGAGAcaatggatgtaccaatcccagattgcccctttaaagaaGGAAAACAATAATGCAGTCTTCTGCTGTCATTTCTCCTTCTGACATAAACTAGATGTCAAACCCTCAGGGCAGTAGAAGAATAACAGTTGTTTTTCAGTGTGAAGGGTTTAGgaacccaaataaatgctgctTATCAAAGCCACATTTGCCACAATCTCAAACAGTCACTTACACAGTGGGTGCTCAATGgtcttttaaaaacattttctttaCACAGTTTCTTATTATAATGTTGAGCATATTATAGTAGTATACATTTTTAACAAGTGTGTTCTTGTCTTAGAGTACTGTCTAAGCTACCACACCATTTTCATCAAATTATAAGATTTTTTACATCCATGGGCACTTGGAAAATATTTTTGAAAAATAAAGTATCAAGTCCGATTTGTGTGAATCGTAAATgctgcagacagagagaaaaatataatCGTCATCGTGGCAATAACGTCAGTTGTGTTATTAGTTTGAAATGTCTGATAAATGTAATCTGTCCTCAGGTTGGCCTTTAGTAGAGAGTGGCCACTGCTTGTTTTAGCTAGGCtaaatcccaaatggcagcctactcCCTATATtgcacactacttttgaacagggccctggGCAAAATTAGTGGACTATCGGGAATAAAGGGCCTTTTAGGATGCATCGCTGTACTTTTTTTCTCTTGATGTACCGCTGCCCTCTGAGTGCTCCCTCATACATTCCTCTTATCAGCTAAACGATATCAAAGCTGTTTGTTCATAAATCATAGAGAAATAATGCTTGGGGGCAATATCGCAATGCTACTACTGTTTAATTTGTCTTTTGTGGCCTTGGACaatttgggggtgctttgcttcatTTGAATATGTCAAACCATTTTATGACGGCAAACCATTTCATGACCATTTCATATGTAAGTGTCAGACCATTTCATGACCATTTCATATGTAAGTGTCAGACCATTTCATGACCATTTCATATGTAAGTGTCAGACCATTTCATGACCATTTCATATGTAAGTGTCAGACCATTTCATGACCATTTCATATGTAAGTGTCAGACCATTTCATGACCATTTCATATGTAAGTGTCAGACCATTTCATGACCATTTCATATGTAAGTGTCAGACCATTTCATGCTCCTAATATTGTATTGACCTACCTCTTATGTCAAGGACAATCCCAAGGCAATGTCGACCCTCTTCCTcacaactgaaatatcatatttccCTTAATAATAGGCAGCGTTTTCCCCCCACATCGTCCCAATATGTCAAGCCTGCGAATGCCCTTTTTGTCagtgtgcacttcacaaatataTAGTCAACCATCAATCAATGACTTACATTTGAATGAAAAGGAAACTGTTTTAAAATACAGAACAGCATACAGAGTAAGACACTAAGTAAGGAATTAATGTTTAATGGGAACTGCATGTTTCGTTTATACTAagcaacacactgctactgtaacCCTCTATGCTTTCATGTCTATAGACAGTCTTCCAATAggaatacataataataataactactTTATTTGTATAGCGCGTTTTAACACAAGTAAAAAGCGCCTAATTTCATAAAACAATCAAATAAAAAGTACTGACAGAGACGGGAAGGAAAATGACAAATGATAGCAAAATGAAATGACCTTTAAATGTATGATTTCAATGTATCTTTATAAAAGTGTGTCTTCAGCAGGGATTTAAAAAGAGGCACTGAATCGGCAGGCCTGGTATCCTCTGGCGGACCATTCCAAAGTCCAGGGGCCCTAATGGCAAATACCTGCTCTTCTTTCGTTTTCAACCGAGACTTTGGAATGGTCAGCGGTGCCCTGCCAGAGGATCTCAGGCTGCATCCTGGCTCGTAGGGAAATAAAAGATCTGCGATATGGAATGGGGCTAAACCAAGTCTACTAATGCAATTTAGAAATATACTCCAAAAGTGACTGGTAGCCTTTGTAGAGGAGCTAAAATAGGTGTGATGTGGTAACATGTCCTGGTGCCTGTTAAAAGAAGAGCTGCAGCACTTTGAACTAACTGTAGACAAATGGAGTGATTTCTGACtgagacatgcacacaaacgAGTTACATTAATGTAGGCATGAGGAATAAAAAGCATGTATAACTTTCTCCAGATCAGTGACTGAAATAAGACTTTGACTTTAGCTATATTTCTTAGGTGATGAAAGCAGGACTGGACTACCGTTTTTACATGCTCGAGGTCAAGGTCAAAGAGGACAAGGTTACTGGCCGTAGGCTTTACATTGGTGGACTAATGACCAAGGTTATTTACAATCTGgatggggggccaaataaaacatCCTCTGATTTTTGTATCATTGAGCTGGAGAAAATGTTCAGTCATCCAACATTTTATGTCAACAAGACACTTGTGAAGGGTAGCTATGCTAGCTTGGTCACTGGGTCTGATTGTTAAATAAAGCTATGTCATCCGCCTAGCAGTGACACTGAATTGTTATGATTGTGGATGATGTCACCAAGGGGACAGGTAAAAAAGGATGTGGCCCAGATTTGACCCCTGAGGGACACAATAGTGAATAGCTGCTGGGGACATTACTGAACCACCCATGCTCACGGGAAACGTCTGCCACATAAATGACCTGAATCAGTCGAGGTCAACGCCAGAGTTTCGCCAGAGTTTCTCACCTACTTCTTCAGCCGGTCAACAAGGATGTTATGACAGGTATTACAGTAACACTTTTTAAAGAGGGTAAAAAAAAGTGAAGCATTATTGTGAAGGTTTACATTATTGACATTAGTTCTTCAGATACATGGTCCAGGTGTTTCAGGTACCCCCATACAGAATATAGTTTATGATCAAAATGATTGGCGTCcttgatttttaaaatgtttaccgTCATTTGATAAATATGAGTcaaaaatactgagctatattgtacgATAAATTCATTTGacaattatattattttaaactaatacaattgctcataGAACTATTTTTTATAACAATAATTAAAAACAAATCTGTATGTAAAGATTCGGTacggaggaatggtctaagatccctctcAATGTCTACTACAATCTTATAAAACATTTTAGCAAAAGGCTAAGTGCTGTTATCCTCACAAGTGGCGGGTACCAGAGTACTGAGCAATAATTTTGACCACTATTTTCGGAAAGAAAACaatatattacttgttaaacaaaatctctttctctgagcaattgtattagcataataataaaaaatagcaTAAATTAGCATACCGCTCAGTCTTTTTCTCATCttcatcaagggtgccaataatttcgGTCATGACTGTATGCGtttgtcacaaatggcaccctattccctcgatagtgcactactgttgaccagagtcttATGTACCTTAGGACAAATGTAATGCACTATGGAATAGTATGCCATTTGTGAGACAGAATATATGCAAAACTATAAGAAGATGTGGATCAGGTATTGACAGTCAGAAAGGTTTGTTTTCTGACGTCCAacccatagaaatacaatgagTAGAGCGGttgtccccattcaagtcaattatGCTATAGTGGGTGACTGGCGGACAGTTTGAGTGTACCCATAGAGATAAAACATTCAGCCTCTCAGCAAGGCTTGTGTGATCTCAAAAGAGCATTGTGACATTGCTATAAGAGGGTGGATGGGAAGCTAGAAGCCTGAAAACAAAACATAACTGTACAATGTATCGTATCGATTTACGGATACGCACACACAAGCTACGATAGAACTCACAAAATGCAGCTTTTTTTTTGTCCCAGAAACACTGAAAAATGAATAGGCGTTGTCTGTCTATCAAGTCCACCACAAAACCGCTTGCTGTTACTCCCTCCATTGCAGGAAGCTTTTGAAAAAGAAAAGAGTAGAAGTTTGTTTGTATATAGAGATACTGTGTATGTGGGCCTGGTGTACAGAGTAAAGTACAACAACTCTTTTCCTCAGGAGTCCCCTGCTGCCtagcagagaaagagaaagaccaCTAAATACTGACAGGATAGCTTATCTTCTTCCTCCTAGTCCTCCAGAGAGGTCAAACATCAACGGTGATCAACGACGGTAAGACACTGCCTCGTGTCTGTTTGTGTCCTCTTTGTTTTGTTCTATTGTTTGCCACTTTCACAAAGTACCAGGAGTTAAGTTCACTTTCGCTAGTGTGcgagtgtttgtttgtttgttgtatgTTTTCCTTTAGCTCCCCTCTTACGAGCCCCTTCTCTCTCATTAGGAATCCCTGCAGCTGTCACTGTCCTCTCCCCCGTACAAGTCAGCCAGTTTCTTAAACCTGGGTCCCCACTCGCTCAGGTAGTTATAGTCCTGGTCTCCCTCTATGGTCATGGAGCCCAGGGAGCTAAGGGACTCAGCAACCGAGCCGCTCCCTTCGTAGGCGTAGGTGGCCAGGGAGTCGTAGGGCGGTGCGGTGGGGTCCTGGTCGTTTTCCTGAAGCCTTTGGTTTATGAAGTTCCTGACGTCCGCGTTGTCCCTGTGGGCCGGGGGAAGGATCACAGTCCGACGGATGGGAGGTTGCAGGGTCTCGGGCTTAATGTCCCTGCGCTGTTTGCTCTCCTCTGTGGCCTCTGGGTTGCGCAGCGTGCCGATATCAAAGGCCTGGGTGTCCTCCTCTCCGCCCCCTTCATCGTTGTAGCTGACAACGTTGTCTCTCACATCCTCTTTGGAGATGATCAGAGGCTCCTTCTTCCTCTGCTGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1465067 True 5451 lncRNA 0.41 2 33262605 33268078

Neighbor

gene id symbol gene type direction distance location
LOC110490956 drosha coding upstream 561 33099881 ~ 33262044 (+)
LOC110490013 LOC106590056 coding upstream 245648 33014206 ~ 33016968 (+)
LOC118938962 NA coding upstream 329755 32932796 ~ 32932850 (+)
LOC110490011 LOC106590060 coding upstream 782616 32350805 ~ 32480547 (+)
LOC118938888 NA coding upstream 1250860 32008121 ~ 32011745 (+)
LOC110490016 LOC106590054 coding downstream 1008943 34277021 ~ 34325910 (+)
LOC110490017 LOC106590053 coding downstream 1355836 34623914 ~ 34822015 (+)
LOC110490018 LOC106578564 coding downstream 1724345 34992423 ~ 35361339 (+)
LOC118938916 NA coding downstream 2348746 35616824 ~ 35619520 (+)
LOC110490019 LOC106578561 coding downstream 2468304 35736382 ~ 35815615 (+)
G1283159 NA non-coding upstream 15782 33246564 ~ 33246823 (+)
G1283117 NA non-coding upstream 46939 33215367 ~ 33215666 (+)
G1283041 NA non-coding upstream 113695 33148389 ~ 33148910 (+)
G1283037 NA non-coding upstream 115381 33147012 ~ 33147224 (+)
G1283025 NA non-coding upstream 121887 33140444 ~ 33140718 (+)
G1283335 NA non-coding downstream 92934 33361012 ~ 33361285 (+)
G1283338 NA non-coding downstream 95439 33363517 ~ 33363845 (+)
G1283350 NA non-coding downstream 101649 33369727 ~ 33369963 (+)
G1283355 NA non-coding downstream 103200 33371278 ~ 33371783 (+)
G1283372 NA non-coding downstream 117935 33386013 ~ 33386276 (+)
G1282302 NA other upstream 564569 32687558 ~ 32698036 (+)
G1281462 NA other upstream 1266092 31996167 ~ 31996513 (+)
G1279833 NA other upstream 2315275 30944171 ~ 30947330 (+)
htr5ab htr5a other upstream 2854588 30395817 ~ 30416375 (+)
G1279349 NA other upstream 2959186 30303033 ~ 30303419 (+)
G1284354 NA other downstream 843729 34111807 ~ 34112271 (+)
G1286648 LOC106590042 other downstream 2767505 36035583 ~ 36093396 (+)
G1287489 LOC106590045 other downstream 3241000 36509078 ~ 36510512 (+)
G1289491 NA other downstream 4915358 38183436 ~ 38184003 (+)
G1289710 NA other downstream 5326802 38594880 ~ 38600241 (+)

Expression


Co-expression Network