XLOC_031904 (fam117ba)


Basic Information

Item Value
gene id XLOC_031904
gene name fam117ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 12853655 ~ 12865827 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062470
GAAAAACAGCACCACGCGCCTCAGCAACAGTAACGTCGTCTAGTGTGCGCGGGCACGACAGTGCGGGAGCGCGCACCTCAACGCCATCTGTCAGAGGGGGACCCCCTTACCACCCCTTCCAAAAATACGCCTGCAACCTCAAAAAAACATCGAATTCTGTCTTTTATCCTTCCGCTGAAGAGAATCTATTCATAAAGCAGTCACTTCCATGATCCAGCGCTGCTCCAGCATCACCTTTACAGCGACGCCCATAGCAACGCCTCTGCGCATCCTCAATCTGCTTCTCTGACCCAGCAACACCGGCCGCCTTCCACCAAGCCAACAACCAGCCGCTTTTCAGCGACCTTCCAGACGCTGCATCCATTTCACGCCGACCCCTTTTCTTTTTATCGCAAGGGACCATGAACGCGCTGTGTGCAGTCATTCTCTCATCAGTCGAAGCCACTTCTCATTGCGAAAGGCCGTCCTCCAGCTGAAACCCTGAGGGATCCTCCTCTTTTGAAGTCACCTGTAAGTTCTGGCCTATCAAGGAACTGGCAGCGGCACGGGAGCTCCGCCCACCACACCCTCTAAATGAGGGACAAGGCCACTCAGACCCCTAGGGCCTGGGTAGATGAGCGGAGGAGAGGCTCTCATAAGCGATCGGCTTCCTGTGGCAGTACAGACCAACTGAAAGAGATTGCAAAACTACGGCAACAGCTCCAACGCAGCAAACGCAGCAGTCGTCATCGCCGGGACAAAGATCGCAAGTCACCCTTTAACGGCAACCATGCAATCATCCAGTCACAGtcTCAGATGCCTAAAACCATCCTCATTCCCATCCCCATCACCAAATCCACACCTCCCAGATTTCGGAACAGCATAGAGGGGCTCAACCAGGAGATTGAACGCATCATCATACGAGACACTGTGGAACGAGATGAGGTCATAATAcCACAGGATGTTCCTGACGGGCACCGCGCGCCCCCTCCCCTCCCCCAGCGCAGCAGCAGCACACGCAGCATCGACACACAGACGCCCTCCAACGGCGGTCTGAGCAGTAACCGTAGCAACAGCAGCAGCCGAGCCGACTCCGTCTCTCCCTCATACCTCAGCATCCTCAATGACACGGTCGGAAACAGTCCACTTGATGACGCACTCAATGAGAGCAAAGAAAGAGACCTGGGACCTTGGTCTCCTCTGCCCAAATATGCTTCGTCTCCAAAGCCCAACAACAGCTACATGTTCAAGCGTGAGCCTCCGGAGGGCTGTGAAAGAGTTAAAGTTTTTGAAGAAAACCAGCCAAGGCCTCTCCAGGAGATTCCTCCATATCTCTGCCCAGACAGAAACAAGGTGAACTTCATACCCAAAAGCGGCTCTGCCTTCTGCCTGGTGAGCATCCTGAAGCCTCTGCTCCCCACCCAAGAGCTGACCTTCCGCAGCGGGGTGAGCTACCGCAGCATCTCCCCCTCCCTGGTGCCTCTGACTGGGGTCGGAGTAAGGAGCCTGTCCCCCTCCATGGGCCCCGTCCTGTCCCGTGGACGTCAGTCACCATGCCTCCCACGACACCTTGAGGAGCCAGAGGGATAAAACAATACTAAATTCAGCTGATGAACAGAGATGTCAttttacccacacacacacctcccGTGTCATCTGATAAAGAGTCAGAGCtttgttatgattttttttaagaagATGTTCTGAGAAATACATCTGAAACTTGAACATGAAGGGTTTTTGCTGTTATTTAAAGGTATTAcgtgttttacaaagtggatcaCAGTGGAGGCTTTTCAGGATGGTGGATGTAAATAGATTTTTAGTACTGCACTGCTTTTTACTTTCTCGACGATTTATTGCATTTTACCATGAAGCCTTTGAATTTTCTTATGTATAGCGGCATCCTTTAACCTACACTAAAGTTTGGAACAATGAGgagcttttaaaaa
>TCONS_00062471
ATGAACAATCAGCCAAGGCCTCTCCAGGAGATTCCTCCATATCTCTGCCCAGACAGAAACAAGGTGAACTTCATACCCAAAAGCGGCTCTGCCTTCTGCCTGGTGAGCATCCTGAAGCCTCTGCTCCCCACCCAAGAGCTGACCTTCCGCAGCGGGGTGAGCTACCGCAGCATCTCCCCCTCCCTGGTGCCTCTGACTGGGGTCGGAGTAAGGAGCCTGTCCCCCTCCATGGGCCCCGTCCTGTCCCGTGGACGTCAGTCACCATGCCTCCCACGACACCTTGAGGAGCCAGAGGGATAA

Function

symbol description
fam117ba Orthologous to human FAM117B (family with sequence similarity 117 member B).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-569 Orthologous to human FAM117B (family with sequence similarity 117 member B).

Ensembl:

ensembl_id ENSDARG00000074921

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062470 False 1931 mRNA 0.52 8 12853655 12865827
TCONS_00062471 True 300 mRNA 0.60 2 12865137 12865465

Neighbor

gene id symbol gene type direction distance location
XLOC_031903 stk24b coding upstream 302296 12482599 ~ 12551359 (+)
XLOC_031902 nr4a2b coding upstream 387105 12462079 ~ 12466550 (+)
XLOC_031901 si:dkey-276j7.3 coding upstream 521550 12326267 ~ 12332105 (+)
XLOC_031900 si:dkey-276j7.2 coding upstream 531754 12316438 ~ 12321901 (+)
XLOC_031899 wdsub1 coding upstream 820951 12006557 ~ 12032704 (+)
XLOC_031905 cxcr4a coding downstream 56175 12922002 ~ 12923727 (+)
XLOC_031906 mcm6 coding downstream 102274 12968101 ~ 12985390 (+)
XLOC_031907 si:ch73-71c20.5 coding downstream 121026 12986853 ~ 12993502 (+)
XLOC_031908 pnkd coding downstream 158621 13024448 ~ 13037815 (+)
XLOC_031909 catip coding downstream 174124 13039951 ~ 13045541 (+)
XLOC_031897 AL929243.2 non-coding upstream 1078923 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 1835123 11018416 ~ 11018532 (+)
XLOC_031888 NA non-coding upstream 1845225 10988645 ~ 11008430 (+)
XLOC_031887 NA non-coding upstream 1922565 10930890 ~ 10931090 (+)
XLOC_031885 NA non-coding upstream 1963431 10889061 ~ 10890224 (+)
XLOC_031915 NA non-coding downstream 394255 13260082 ~ 13267143 (+)
XLOC_031917 NA non-coding downstream 478848 13344675 ~ 13348236 (+)
XLOC_031925 dre-mir-153b non-coding downstream 1115118 13980945 ~ 13981092 (+)
XLOC_031933 NA non-coding downstream 2439938 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 2678228 15544055 ~ 15544170 (+)

Expression


Co-expression Network