G1286552


Basic Information

Item Value
gene id G1286552
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 35703977 ~ 35704585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1468555
gtcctgtatttggctccatccatcttcccatcaatttgaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagaattgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgggctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaaca

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1468555 True 609 lncRNA 0.45 1 35703977 35704585

Neighbor

gene id symbol gene type direction distance location
LOC118938916 NA coding upstream 84457 35616824 ~ 35619520 (+)
LOC110490018 LOC106578564 coding upstream 342638 34992423 ~ 35361339 (+)
LOC110490017 LOC106590053 coding upstream 881962 34623914 ~ 34822015 (+)
LOC110490016 LOC106590054 coding upstream 1378067 34277021 ~ 34325910 (+)
LOC110490956 drosha coding upstream 2441933 33099881 ~ 33262044 (+)
LOC110490019 LOC106578561 coding downstream 31797 35736382 ~ 35815615 (+)
LOC110490020 LOC106590040 coding downstream 143301 35847886 ~ 35895107 (+)
LOC110490021 LOC106590041 coding downstream 192689 35897274 ~ 35988249 (+)
LOC110490024 LOC106590043 coding downstream 461922 36166507 ~ 36264082 (+)
LOC110490026 m3k8 coding downstream 918871 36616159 ~ 36635732 (+)
G1286533 NA non-coding upstream 19422 35684287 ~ 35684555 (+)
G1286526 NA non-coding upstream 25700 35677878 ~ 35678277 (+)
G1286525 NA non-coding upstream 26515 35677189 ~ 35677462 (+)
G1286518 NA non-coding upstream 31527 35671610 ~ 35672450 (+)
G1286508 NA non-coding upstream 42977 35660687 ~ 35661000 (+)
G1286563 NA non-coding downstream 7036 35711621 ~ 35712014 (+)
G1286564 NA non-coding downstream 8226 35712811 ~ 35713103 (+)
G1286624 NA non-coding downstream 126272 35830857 ~ 35932134 (+)
G1286651 NA non-coding downstream 291114 35995699 ~ 35996167 (+)
G1286648 LOC106590042 non-coding downstream 330998 36035583 ~ 36093396 (+)
G1284354 NA other upstream 1591706 34111807 ~ 34112271 (+)
G1282302 NA other upstream 3005941 32687558 ~ 32698036 (+)
G1281462 NA other upstream 3707464 31996167 ~ 31996513 (+)
G1279833 NA other upstream 4756647 30944171 ~ 30947330 (+)
htr5ab htr5a other upstream 5295960 30395817 ~ 30416375 (+)
G1287489 LOC106590045 other downstream 804493 36509078 ~ 36510512 (+)
G1289491 NA other downstream 2478851 38183436 ~ 38184003 (+)
G1289710 NA other downstream 2890295 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 3332420 39037005 ~ 39061248 (+)

Expression


Co-expression Network