G1287285 (LOC106590044)


Basic Information

Item Value
gene id G1287285
gene name LOC106590044
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 36325138 ~ 36328721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1469342
CCCTGCTGCACCTGGACctgtgctcctctctcctcgtccAGTTCAACAGTCATTAGCGCTGACGTCCCCTTTTCACTGACGGTAGAATTCCGGCCCTGCCAGAAGAAATAGGAACACTTCTCCTTCCCAGCTCCTGCGCTCCTCACCGCGTCCGGATTCTGCCTCTTCCCAACTGCTGTGCTCACCATGTACTTCCATTTCACCACATAGGTGTCTCCCTCATGGAACTGTCCGATGCTCTGCTTGGGCAGCCGGCTGTAGTCAAACTCTAGTATGTGCCAGATGTCCACAGCGGTGGTGCTGATCTCAAAGTGCCTGCGGTCATCCCCCGCCACCGGGCCATAGCCCCGGCCCAGGTCCACCCCATCCAACACCGTACGAACCGGGGTCTGGAGCAGTGGCAGCATCAGAGAGGCATCATAGGCCCGCATCATGTTCTGTTCCGGGCTCTGCTGCTCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1469342 True 460 lncRNA 0.59 4 36325138 36328721

Neighbor

gene id symbol gene type direction distance location
LOC110490024 LOC106590043 coding upstream 61056 36166507 ~ 36264082 (+)
LOC110490021 LOC106590041 coding upstream 336889 35897274 ~ 35988249 (+)
LOC110490020 LOC106590040 coding upstream 430031 35847886 ~ 35895107 (+)
LOC110490019 LOC106578561 coding upstream 509523 35736382 ~ 35815615 (+)
LOC118938916 NA coding upstream 705618 35616824 ~ 35619520 (+)
LOC110490026 m3k8 coding downstream 294735 36616159 ~ 36635732 (+)
LOC110490839 LOC106588460 coding downstream 476285 36805006 ~ 36805955 (+)
LOC110490032 cul2 coding downstream 540492 36869213 ~ 36902064 (+)
nrp1a LOC106590027 coding downstream 1518545 37847266 ~ 37960593 (+)
LOC110490033 LOC106590025 coding downstream 1646001 37974722 ~ 38017988 (+)
G1287276 NA non-coding upstream 9629 36314318 ~ 36315509 (+)
G1287264 NA non-coding upstream 18954 36305958 ~ 36306184 (+)
G1286648 LOC106590042 non-coding upstream 284374 36035583 ~ 36093396 (+)
G1286651 NA non-coding upstream 328971 35995699 ~ 35996167 (+)
G1287487 NA non-coding downstream 167759 36496480 ~ 36496682 (+)
G1287492 NA non-coding downstream 171880 36500601 ~ 36503020 (+)
G1287495 LOC106590045 non-coding downstream 186111 36514832 ~ 36515324 (+)
G1287504 NA non-coding downstream 204421 36533142 ~ 36533571 (+)
G1287507 NA non-coding downstream 209270 36537991 ~ 36538203 (+)
G1284354 NA other upstream 2212867 34111807 ~ 34112271 (+)
G1282302 NA other upstream 3627102 32687558 ~ 32698036 (+)
G1281462 NA other upstream 4328625 31996167 ~ 31996513 (+)
G1279833 NA other upstream 5377808 30944171 ~ 30947330 (+)
G1287489 LOC106590045 other downstream 180357 36509078 ~ 36510512 (+)
G1289491 NA other downstream 1854715 38183436 ~ 38184003 (+)
G1289710 NA other downstream 2266159 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 2708284 39037005 ~ 39061248 (+)
G1290614 NA other downstream 2797551 39126272 ~ 39127009 (+)

Expression


Co-expression Network