G1287495 (LOC106590045)


Basic Information

Item Value
gene id G1287495
gene name LOC106590045
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 36514832 ~ 36515324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1469580
GAGAGAATCGCCCATGGAGTGCGCGTCACCTTGGTTACCGCTGTCCGCTTCCCTCCTCTGTGGTTGGCTATTTCTGTCCCTCCCACCTTTGGTTGGGGCCGGTGGCTGGGGCCACCTGCTGGTGCTGGTGCTGTTGCTATACACATAGACCCCTGGCCCAGACTGTATCTCATACCCGTTCACTGTTCCATGACCACCACCGGACCGGGTCTCTAAGATCTCCTGGCGGCAGGAGGACGGGTCGCCGTAACGCTTGTTATCGTAAGAGGACGGGGGTGTGGGGGAGGCAGCAGGAGTAGAGGTAGAGGTTTTTTGGGGCAGTTTGTATCCATGCGAGATGAGCAGGTCATCCACGCTGTACATGGTCACATTTGTTTTGCTGGTGTTGTTTTTGGGATGAGGTTGTAGGGGACTGGTAGAGGGGGGCGTCACCCAGACCTGGTTCCTAGAGGCAGCGACAGGAGCCCAAGCACAGCTGCGCAGCTGATGAGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1469580 True 493 lncRNA 0.58 1 36514832 36515324

Neighbor

gene id symbol gene type direction distance location
LOC110490024 LOC106590043 coding upstream 250750 36166507 ~ 36264082 (+)
LOC110490021 LOC106590041 coding upstream 526583 35897274 ~ 35988249 (+)
LOC110490020 LOC106590040 coding upstream 619725 35847886 ~ 35895107 (+)
LOC110490019 LOC106578561 coding upstream 699217 35736382 ~ 35815615 (+)
LOC118938916 NA coding upstream 895312 35616824 ~ 35619520 (+)
LOC110490026 m3k8 coding downstream 108132 36616159 ~ 36635732 (+)
LOC110490839 LOC106588460 coding downstream 289682 36805006 ~ 36805955 (+)
LOC110490032 cul2 coding downstream 353889 36869213 ~ 36902064 (+)
nrp1a LOC106590027 coding downstream 1331942 37847266 ~ 37960593 (+)
LOC110490033 LOC106590025 coding downstream 1459398 37974722 ~ 38017988 (+)
G1287492 NA non-coding upstream 11812 36500601 ~ 36503020 (+)
G1287487 NA non-coding upstream 18150 36496480 ~ 36496682 (+)
G1287285 LOC106590044 non-coding upstream 186111 36325138 ~ 36328721 (+)
G1287276 NA non-coding upstream 199323 36314318 ~ 36315509 (+)
G1287264 NA non-coding upstream 208648 36305958 ~ 36306184 (+)
G1287504 NA non-coding downstream 17818 36533142 ~ 36533571 (+)
G1287507 NA non-coding downstream 22667 36537991 ~ 36538203 (+)
G1287510 NA non-coding downstream 25590 36540914 ~ 36541144 (+)
G1287532 NA non-coding downstream 62029 36577353 ~ 36577567 (+)
G1287535 NA non-coding downstream 65170 36580494 ~ 36580735 (+)
G1287489 LOC106590045 other upstream 4320 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 421436 36035583 ~ 36093396 (+)
G1284354 NA other upstream 2402561 34111807 ~ 34112271 (+)
G1282302 NA other upstream 3816796 32687558 ~ 32698036 (+)
G1281462 NA other upstream 4518319 31996167 ~ 31996513 (+)
G1289491 NA other downstream 1668112 38183436 ~ 38184003 (+)
G1289710 NA other downstream 2079556 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 2521681 39037005 ~ 39061248 (+)
G1290614 NA other downstream 2610948 39126272 ~ 39127009 (+)
G1291464 NA other downstream 3552234 40067558 ~ 40067907 (+)

Expression


Co-expression Network