G1287652



Basic Information


Item Value
gene id G1287652
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 36762478 ~ 36764656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1469756
gggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgt
>TU1469757
gggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtattttttttgtttccttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttctttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaacgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtattttttttttgtttcttact
>TU1469755
atatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaacgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaacgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtattttttttttgtttcttact

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1469756 False 367 lncRNA 0.33 2 36762478 36763616
TU1469757 False 543 lncRNA 0.32 2 36762478 36764656
TU1469755 True 258 lncRNA 0.33 2 36763238 36764656

Neighbor


gene id symbol gene type direction distance location
LOC110490026 m3k8 coding upstream 126746 36616159 ~ 36635732 (+)
LOC110490024 LOC106590043 coding upstream 498396 36166507 ~ 36264082 (+)
LOC110490021 LOC106590041 coding upstream 774229 35897274 ~ 35988249 (+)
LOC110490020 LOC106590040 coding upstream 867371 35847886 ~ 35895107 (+)
LOC110490019 LOC106578561 coding upstream 946863 35736382 ~ 35815615 (+)
LOC110490839 LOC106588460 coding downstream 40350 36805006 ~ 36805955 (+)
LOC110490032 cul2 coding downstream 104557 36869213 ~ 36902064 (+)
nrp1a LOC106590027 coding downstream 1082610 37847266 ~ 37960593 (+)
LOC110490033 LOC106590025 coding downstream 1210066 37974722 ~ 38017988 (+)
LOC110490034 rab18 coding downstream 1253555 38018211 ~ 38038025 (+)
G1287535 NA non-coding upstream 181743 36580494 ~ 36580735 (+)
G1287532 NA non-coding upstream 184911 36577353 ~ 36577567 (+)
G1287510 NA non-coding upstream 221334 36540914 ~ 36541144 (+)
G1287507 NA non-coding upstream 224275 36537991 ~ 36538203 (+)
G1287656 NA non-coding downstream 10881 36775537 ~ 36781625 (+)
G1287746 NA non-coding downstream 64379 36829035 ~ 36829298 (+)
G1287764 NA non-coding downstream 79277 36843933 ~ 36844141 (+)
G1287781 NA non-coding downstream 103891 36868547 ~ 36868890 (+)
G1287790 NA non-coding downstream 129843 36894499 ~ 36894905 (+)
G1287489 LOC106590045 other upstream 251966 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 669082 36035583 ~ 36093396 (+)
G1284354 NA other upstream 2650207 34111807 ~ 34112271 (+)
G1282302 NA other upstream 4064442 32687558 ~ 32698036 (+)
G1281462 NA other upstream 4765965 31996167 ~ 31996513 (+)
G1289491 NA other downstream 1418780 38183436 ~ 38184003 (+)
G1289710 NA other downstream 1830224 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 2272349 39037005 ~ 39061248 (+)
G1290614 NA other downstream 2361616 39126272 ~ 39127009 (+)
G1291464 NA other downstream 3302902 40067558 ~ 40067907 (+)

Expression



Co-expression Network