G1288296


Basic Information

Item Value
gene id G1288296
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 37261019 ~ 37261726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1470442
cccgtccaataaggagagatatgacgtaggcgacacgagcagtgctcctggagtaagtgttgggctggagagaaaacacaatatcacactgggtgaggaacgagcggcattcagtgggctccccagagtaacacggcgggttattgattctgggctccggagactcgaaagccctggaagtggccggtggatcgaggcggagatggtgaacctgttctgtgaggttggagacttgggtggccagggtctcaacggcatgtcgagcagcagacaattcctgcttgtgtctgcctagcatcgctccctggatctcgacggctgagtggagaggatccgaagtcgctgggtccattcttggtcggattcttctgttatggtgcgtgaatgaggacccaaaagcgaattaacaaacagagtactttaatgacgaacatacgtgggctcagatggacaggtagattccgacaggacaggacaaggttgcagcacacacgatgatagtctggttcaggcatgagacacataaacaaacaaacaagaatccgacaaggacaggagcagaaacagagacagatatagggacctaatcagagggaaaaaagggaacaggtggggaacggggtgaatgggtaattaggaggagacaaggcacagctggggaaaagagggggagaaaaggtaacataacaacgaccagcagagggagac

Function

NR:

description
PREDICTED: protein LDOC1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1470442 True 708 lncRNA 0.52 1 37261019 37261726

Neighbor

gene id symbol gene type direction distance location
LOC110490032 cul2 coding upstream 358955 36869213 ~ 36902064 (+)
LOC110490839 LOC106588460 coding upstream 455064 36805006 ~ 36805955 (+)
LOC110490026 m3k8 coding upstream 625287 36616159 ~ 36635732 (+)
LOC110490024 LOC106590043 coding upstream 996937 36166507 ~ 36264082 (+)
LOC110490021 LOC106590041 coding upstream 1272770 35897274 ~ 35988249 (+)
nrp1a LOC106590027 coding downstream 585540 37847266 ~ 37960593 (+)
LOC110490033 LOC106590025 coding downstream 712996 37974722 ~ 38017988 (+)
LOC110490034 rab18 coding downstream 756485 38018211 ~ 38038025 (+)
LOC110490038 LOC106590019 coding downstream 1232563 38494289 ~ 38568479 (+)
LOC110490039 LOC106590018 coding downstream 1314909 38576635 ~ 38580756 (+)
G1288031 NA non-coding upstream 206218 37054596 ~ 37054801 (+)
G1287891 NA non-coding upstream 306379 36954379 ~ 36954640 (+)
G1287795 NA non-coding upstream 349912 36910756 ~ 36911107 (+)
G1287790 NA non-coding upstream 366114 36894499 ~ 36894905 (+)
G1287781 NA non-coding upstream 392129 36868547 ~ 36868890 (+)
G1288319 NA non-coding downstream 15795 37277521 ~ 37277920 (+)
G1288345 NA non-coding downstream 30138 37291864 ~ 37292205 (+)
G1288347 NA non-coding downstream 35925 37297651 ~ 37297891 (+)
G1288354 NA non-coding downstream 39486 37301212 ~ 37301436 (+)
G1288358 NA non-coding downstream 44700 37306426 ~ 37306673 (+)
G1287489 LOC106590045 other upstream 750507 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 1167623 36035583 ~ 36093396 (+)
G1284354 NA other upstream 3148748 34111807 ~ 34112271 (+)
G1282302 NA other upstream 4562983 32687558 ~ 32698036 (+)
G1281462 NA other upstream 5264506 31996167 ~ 31996513 (+)
G1289491 NA other downstream 921710 38183436 ~ 38184003 (+)
G1289710 NA other downstream 1333154 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 1775279 39037005 ~ 39061248 (+)
G1290614 NA other downstream 1864546 39126272 ~ 39127009 (+)
G1291464 NA other downstream 2805832 40067558 ~ 40067907 (+)

Expression


Co-expression Network