G1288580


Basic Information

Item Value
gene id G1288580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 37490362 ~ 37490843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1470739
gagtACGGGGagaaaacacgctggttgacttgactaaacatacaagaccaactggcacagagagacaggaaacacagggataaatacactggggaaaataatcGACAcctggtgtcacgccctggtcttagtattttgtgttttctttattattttgattaggccagggtgtgacatgggtttattatgtgatgtgttttgttttttgtaggtattgggattgtggtatagtggggttttctaggaaagtctatggttgcctgaagtggttcttaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcaaccatattctttgagtgtttcgtgggtgattgttcctgtctctgtgtttgtttgcaccagataggctgtttaggttttcgtgttacgtttcttgttttgtattgttcgtgtttattttgtttattaaacGTGTAtcaaaattaccacgctgcattt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1470739 True 482 lncRNA 0.40 1 37490362 37490843

Neighbor

gene id symbol gene type direction distance location
LOC110490032 cul2 coding upstream 588298 36869213 ~ 36902064 (+)
LOC110490839 LOC106588460 coding upstream 684407 36805006 ~ 36805955 (+)
LOC110490026 m3k8 coding upstream 854630 36616159 ~ 36635732 (+)
LOC110490024 LOC106590043 coding upstream 1226280 36166507 ~ 36264082 (+)
LOC110490021 LOC106590041 coding upstream 1502113 35897274 ~ 35988249 (+)
nrp1a LOC106590027 coding downstream 356423 37847266 ~ 37960593 (+)
LOC110490033 LOC106590025 coding downstream 483879 37974722 ~ 38017988 (+)
LOC110490034 rab18 coding downstream 527368 38018211 ~ 38038025 (+)
LOC110490038 LOC106590019 coding downstream 1003446 38494289 ~ 38568479 (+)
LOC110490039 LOC106590018 coding downstream 1085792 38576635 ~ 38580756 (+)
G1288483 NA non-coding upstream 89867 37400176 ~ 37400495 (+)
G1288373 NA non-coding upstream 164718 37325384 ~ 37325644 (+)
G1288362 NA non-coding upstream 180015 37309684 ~ 37310347 (+)
G1288358 NA non-coding upstream 183689 37306426 ~ 37306673 (+)
G1288354 NA non-coding upstream 188926 37301212 ~ 37301436 (+)
G1288669 NA non-coding downstream 71820 37562663 ~ 37563128 (+)
G1288677 NA non-coding downstream 76894 37567737 ~ 37567970 (+)
G1288683 NA non-coding downstream 81465 37572308 ~ 37572620 (+)
G1288745 NA non-coding downstream 122296 37613139 ~ 37613355 (+)
G1288826 NA non-coding downstream 178794 37669637 ~ 37669867 (+)
G1287489 LOC106590045 other upstream 979850 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 1396966 36035583 ~ 36093396 (+)
G1284354 NA other upstream 3378091 34111807 ~ 34112271 (+)
G1282302 NA other upstream 4792326 32687558 ~ 32698036 (+)
G1281462 NA other upstream 5493849 31996167 ~ 31996513 (+)
G1289491 NA other downstream 692593 38183436 ~ 38184003 (+)
G1289710 NA other downstream 1104037 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 1546162 39037005 ~ 39061248 (+)
G1290614 NA other downstream 1635429 39126272 ~ 39127009 (+)
G1291464 NA other downstream 2576715 40067558 ~ 40067907 (+)

Expression


Co-expression Network