G1288985


Basic Information

Item Value
gene id G1288985
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 37782398 ~ 37782598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1471150
ggcctctGGAATATttccccactcctcttcaatggctgtgcaaagttactGGATATTGAAAGGAACTAAATCAAGCTATCGTAgacatcaatccagagcatcccaaacatgctcaatatgtgacatgtctagtgagcatgcaggccatagaagaactgggatatgttcagcttccaggaattttgtacagatccttgcgac

Function

NR:

description
Transposable element Tc3 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1471150 True 201 lncRNA 0.44 1 37782398 37782598

Neighbor

gene id symbol gene type direction distance location
LOC110490032 cul2 coding upstream 880334 36869213 ~ 36902064 (+)
LOC110490839 LOC106588460 coding upstream 976443 36805006 ~ 36805955 (+)
LOC110490026 m3k8 coding upstream 1146666 36616159 ~ 36635732 (+)
LOC110490024 LOC106590043 coding upstream 1518316 36166507 ~ 36264082 (+)
LOC110490021 LOC106590041 coding upstream 1794149 35897274 ~ 35988249 (+)
nrp1a LOC106590027 coding downstream 64668 37847266 ~ 37960593 (+)
LOC110490033 LOC106590025 coding downstream 192124 37974722 ~ 38017988 (+)
LOC110490034 rab18 coding downstream 235613 38018211 ~ 38038025 (+)
LOC110490038 LOC106590019 coding downstream 711691 38494289 ~ 38568479 (+)
LOC110490039 LOC106590018 coding downstream 794037 38576635 ~ 38580756 (+)
G1288973 NA non-coding upstream 6193 37775996 ~ 37776205 (+)
G1288968 NA non-coding upstream 10478 37771652 ~ 37771920 (+)
G1288957 NA non-coding upstream 15351 37766843 ~ 37767047 (+)
G1288883 NA non-coding upstream 76897 37705293 ~ 37705501 (+)
G1288842 NA non-coding upstream 100607 37681548 ~ 37681791 (+)
G1288999 NA non-coding downstream 11394 37793992 ~ 37794192 (+)
G1289018 NA non-coding downstream 26532 37809130 ~ 37809346 (+)
G1289031 NA non-coding downstream 36384 37818982 ~ 37819191 (+)
G1289040 NA non-coding downstream 49143 37831741 ~ 37832044 (+)
G1289045 NA non-coding downstream 56316 37838914 ~ 37839126 (+)
G1287489 LOC106590045 other upstream 1271886 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 1689002 36035583 ~ 36093396 (+)
G1284354 NA other upstream 3670127 34111807 ~ 34112271 (+)
G1282302 NA other upstream 5084362 32687558 ~ 32698036 (+)
G1281462 NA other upstream 5785885 31996167 ~ 31996513 (+)
G1289491 NA other downstream 400838 38183436 ~ 38184003 (+)
G1289710 NA other downstream 812282 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 1254407 39037005 ~ 39061248 (+)
G1290614 NA other downstream 1343674 39126272 ~ 39127009 (+)
G1291464 NA other downstream 2284960 40067558 ~ 40067907 (+)

Expression


Co-expression Network