G1289323 (LOC106590025)


Basic Information

Item Value
gene id G1289323
gene name LOC106590025
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38010193 ~ 38011916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1471508
GTTTCCACCACATGGACCTccttctctgtgttgttgttgacagcgTAGGTGTAGTAGAACCAGCAGTCGTTGGCATCCCTCTCCTTACAGTGCATCAGGGGGAAGGCCTGTCCTGGCTGGGGCAGCTTGTCTCGGTCCTTCACCTTGATCAGGTTGAAGTAGCTACAGTCCCTCTCACACGTCTCCTTCTTCTCCCCCGTCCCAAAGGCCCTGCACTGAACACACTCCTTGTGTTCTGCGCAGACTCCTGGACAGGTGGGGCAGATCTCACAGGTAGGCCCCTGGAACTTGGGGTCAGTGCACTTACAGGTTCCACACTCACAGGTGCCCCGGCCATTACAGATCTGCTTGTTAGAGGCCAGGCAGGTTGTGGTGTCCAGAGAACAGTCACAGGCACTGCCCGTCCAGTTGGCATCACAGATACACACCCTGCACTCACAACGACCGTGTCCTCCACAGAGTTTGTTGTTGGAGCGGTCACAGTTAAAGTTGTCACAATCGCAGAACTTTCCACTGTAGCGTTCCTCTGGGTTCTCCCTCTTCTTACACTCGCAGGTTCCACACACGCAGTCTCCATTGTTGCTGCAGATGTCTGTACCATTGTCTTTACGACAGTTCTTATCCAGGTCTTCGCTGGTCACTTCGTTGGTGCTGCACTCACAATGTCTACCTATACGGCCCTCGT

Function

NR:

description
integrin beta-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1471508 True 685 TUCP 0.54 3 38010193 38011916

Neighbor

gene id symbol gene type direction distance location
LOC118938917 LOC106586259 coding downstream 1185424 36821562 ~ 36824769 (-)
LOC118936399 NA coding downstream 1210717 36795385 ~ 36799476 (-)
LOC110490719 NA coding downstream 1217386 36787416 ~ 36792807 (-)
LOC110490031 LOC106586259 coding downstream 1225505 36781591 ~ 36784688 (-)
LOC118938797 LOC106581842 coding downstream 1266448 36668660 ~ 36743745 (-)
LOC110490035 LOC106590023 coding upstream 56009 38067925 ~ 38097938 (-)
LOC110490722 armc4 coding upstream 110037 38121953 ~ 38181214 (-)
LOC110490036 LOC106590020 coding upstream 193187 38205103 ~ 38474245 (-)
LOC110490041 LOC106590032 coding upstream 943573 38955489 ~ 39016126 (-)
LOC110490042 LOC106590033 coding upstream 1006303 39018219 ~ 39023540 (-)
G1289269 NA non-coding downstream 82397 37902613 ~ 37927796 (-)
G1289234 NA non-coding downstream 162809 37847168 ~ 37847384 (-)
G1289228 NA non-coding downstream 171152 37838777 ~ 37839041 (-)
G1289007 NA non-coding downstream 208487 37801415 ~ 37801706 (-)
G1288994 NA non-coding downstream 216433 37788818 ~ 37793760 (-)
G1289411 NA non-coding upstream 106495 38118411 ~ 38118634 (-)
G1289466 NA non-coding upstream 145479 38157395 ~ 38157632 (-)
G1289468 NA non-coding upstream 146197 38158113 ~ 38158347 (-)
G1289952 NA non-coding upstream 170787 38182703 ~ 38183000 (-)
G1288297 NA other downstream 748545 37261015 ~ 37261648 (-)
G1288280 NA other downstream 770783 37239174 ~ 37239410 (-)
G1287067 NA other downstream 1851460 36158436 ~ 36158733 (-)
G1285645 NA other downstream 3024919 34984853 ~ 34985274 (-)
G1283257 NA other downstream 4743975 33262580 ~ 33266218 (-)
G1290276 NA other upstream 622532 38634448 ~ 38634705 (-)
G1290495 NA other upstream 925544 38937460 ~ 38937820 (-)
G1291781 NA other upstream 2074854 40086770 ~ 40087768 (-)
G1292622 LOC108238713 other upstream 2987577 40999493 ~ 41000023 (-)
G1293364 NA other upstream 3578791 41590707 ~ 41591014 (-)

Expression


Co-expression Network