G1289439


Basic Information

Item Value
gene id G1289439
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38135627 ~ 38136087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1471629
caggtcctccgagagagagaaagaaagagagaaagagagaattagaggaagcacacttaaattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccctagccccccaacacataaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgaggacacccacggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatcttcaaccaccaacttaccatcctgagacaaggctgagtatagtccacaaagatctccgccatggcacaacccaagggggtgcgccaacccagacagaatgaccacatcagtgaatcaacccactcaggagactcaccccttccagggacggcatgagagagccccagtaagcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1471629 True 461 lncRNA 0.52 1 38135627 38136087

Neighbor

gene id symbol gene type direction distance location
LOC110490034 rab18 coding upstream 97602 38018211 ~ 38038025 (+)
LOC110490033 LOC106590025 coding upstream 117639 37974722 ~ 38017988 (+)
nrp1a LOC106590027 coding upstream 175034 37847266 ~ 37960593 (+)
LOC110490032 cul2 coding upstream 1233563 36869213 ~ 36902064 (+)
LOC110490839 LOC106588460 coding upstream 1329672 36805006 ~ 36805955 (+)
LOC110490038 LOC106590019 coding downstream 358202 38494289 ~ 38568479 (+)
LOC110490039 LOC106590018 coding downstream 440548 38576635 ~ 38580756 (+)
LOC110490723 LOC106612786 coding downstream 719163 38855250 ~ 38856108 (+)
LOC110490726 LOC106600248 coding downstream 946727 39082814 ~ 39084700 (+)
LOC110490841 NA coding downstream 951986 39086859 ~ 39089636 (+)
G1289432 NA non-coding upstream 3765 38131280 ~ 38131862 (+)
G1289408 NA non-coding upstream 18394 38116967 ~ 38117233 (+)
G1289148 NA non-coding upstream 86262 38023440 ~ 38049365 (+)
G1289050 NA non-coding upstream 289665 37845762 ~ 37845962 (+)
G1289045 NA non-coding upstream 296501 37838914 ~ 37839126 (+)
G1289474 NA non-coding downstream 28500 38164587 ~ 38164806 (+)
G1289487 NA non-coding downstream 43741 38179828 ~ 38180128 (+)
G1289489 NA non-coding downstream 45648 38181735 ~ 38182325 (+)
G1289497 NA non-coding downstream 57251 38193338 ~ 38193634 (+)
G1289500 NA non-coding downstream 59695 38195782 ~ 38196100 (+)
G1287489 LOC106590045 other upstream 1625115 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 2042231 36035583 ~ 36093396 (+)
G1284354 NA other upstream 4023356 34111807 ~ 34112271 (+)
G1282302 NA other upstream 5437591 32687558 ~ 32698036 (+)
G1281462 NA other upstream 6139114 31996167 ~ 31996513 (+)
G1289491 NA other downstream 47349 38183436 ~ 38184003 (+)
G1289710 NA other downstream 458793 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 900918 39037005 ~ 39061248 (+)
G1290614 NA other downstream 990185 39126272 ~ 39127009 (+)
G1291464 NA other downstream 1931471 40067558 ~ 40067907 (+)

Expression


Co-expression Network